LOC111194046


Basic Information

Item Value
gene id LOC111194046
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34134586 ~ 34136689 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650849.1
acacacaacacacacacaccacacacacacacacacaacacacacacacacacatatatataaataaagacacAAGCTACAGATAAAACATGCAGTGGAGTTTTCTCTTTACTGCAGGTTTtgctggtttgtgtttttttatctacCTTTTctccactatctctctctctctctctctctctctctctctctctctctctgtgatgaATTCCTTCTTTTTTCAGGCTAATGTTGATGATGATTCACTTCCTCTGAGAGCTTCTTTAACCGCATGTTGTTGGTTCACAGCAACCGATTCCAAATATAATCTCCACCCCTAAAACCAGCTGCAGATCTTTTACCTCCTTAACTGAAGATGAATTAATAAAGAAGCTAAAATAGCTTTTCGCTTAAtctgaaaaatagaaaaatggttgtaatttctaaaaagttcatttgatattttgttaaaccccttgaattaaacctgaaagtctgaagttaaattatattttattttatattaattttaaatccaATATCCAGTACTCGCAGAATAcggtgtgtttttgttttaaactgaaaacatgcgcacacacacacaccacacaaacacacgcctGTTTCAgatgacgtgtgtgtgtgtgtgtgtctgcattcCAGCAGTGGAGGAAAACTTTCCACAGGAAATGAGGGAATGCGAGCGGCCCCCCAATCGCCCACAGCCCCCCCTATTATCATTATCCACAccagggggaggggcttcaGGTTACATGTAAACATCATCAGCTGATGTGGTTAATTTGGGAGGGACTAAATTACATCAATCAGAACCTAATAAATATACCTGGATTCTGAAGTCCAGTACAGAACCGGTTCCCACAGTATCAGTGCTGACGGGTCGAGCGAGCAGCAcactgaactctctctctcctgcagctCAGATCCGGCTCTACAGGACCAGAATAATTCACttctgctcaacatcaccattCTGTTTCTACATTACAGTTATCAGTTATTAGAGGATCTGCTTTCATTCCATCCCAACCTAATAAagacctgtatatatatatattactccTCTCTCTGCTGACTGTTTATCTGTTCATCCTGATGTAGCAGATCTATAATAAACAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650849.1 True 1122 lncRNA 0.40 2 34134586 34136689

Neighbor

gene id symbol gene type direction distance location
stx18 stx18 coding downstream 31212 34090634 ~ 34103374 (-)
lyar NA coding downstream 56297 34071903 ~ 34078289 (-)
tmem128 tmem128 coding downstream 69538 34057798 ~ 34065048 (-)
otop1 otop1 coding downstream 79014 34044511 ~ 34055572 (-)
LOC103031787 drd5,LOC107701828 coding downstream 93472 34039409 ~ 34041114 (-)
LOC103038859 NA coding upstream 48939 34185628 ~ 34190394 (-)
crmp1 NA coding upstream 54458 34191147 ~ 34198885 (-)
LOC103041332 NA coding upstream 77075 34213764 ~ 34216327 (-)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 83254 34219943 ~ 34228034 (-)
G15486 NA non-coding downstream 92227 34041722 ~ 34042359 (-)
G15454 NA non-coding downstream 210578 33923606 ~ 33924008 (-)
G15452 NA non-coding downstream 243483 33833697 ~ 33891103 (-)
G15449 NA non-coding downstream 243756 33812017 ~ 33890830 (-)
G15451 NA non-coding downstream 246498 33828403 ~ 33888088 (-)
G15509 NA non-coding upstream 20638 34157327 ~ 34158162 (-)
G15510 NA non-coding upstream 30853 34167542 ~ 34167902 (-)
G15512 NA non-coding upstream 37511 34174200 ~ 34175378 (-)
G15513 NA non-coding upstream 40512 34177201 ~ 34178567 (-)
G15516 NA non-coding upstream 58086 34194775 ~ 34195228 (-)
hopx hopx,LOC107552340 other downstream 1313782 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 1974623 32122222 ~ 32159963 (-)
G14839 NA other downstream 3079083 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 3210499 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 3211337 30914910 ~ 30923249 (-)
evc2 NA other upstream 15134 34151823 ~ 34172017 (-)
G15498 NA other upstream 104637 34241326 ~ 34242318 (-)

Expression


Co-expression Network