LOC111194151


Basic Information

Item Value
gene id LOC111194151
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3019118 ~ 3019508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650956.1
TTAGCCGATTTTGTCaatgaatgttttatattacaaCACAAACCTATTGCCTACATCTCAGTCAAACCTAGAATCTCCTAGGCACCCCAAAcccaaaaagtataaaatatatttgtaaagtaTAAAGTTCATTAAACTATTGTTGCTTGTTATAACCGTGGTTTCGTACAATGAGCAGTCGGCCaagttgacttttattttgaagcatgtgaaaaaaaactgtggtgaCGTCGTTTCCGGGACTCAGGGACGAGCTAGGTGTCGTAGAAGAGGTGGACTGACAAATGAGATCTGCGGCCTGACGCTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650956.1 True 310 lncRNA 0.40 2 3019118 3019508

Neighbor

gene id symbol gene type direction distance location
LOC103026461 LOC103026461 coding upstream 43750 2974013 ~ 2975368 (+)
LOC111193073 LOC108412732 coding upstream 100281 2903075 ~ 2918837 (+)
LOC111193070 NA coding upstream 116759 2887621 ~ 2902359 (+)
LOC111194262 NA coding upstream 523162 2495303 ~ 2495956 (+)
LOC111194261 NA coding upstream 524036 2492574 ~ 2495082 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding downstream 45767 3065275 ~ 3101997 (+)
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding downstream 86683 3106191 ~ 3136201 (+)
LOC103027967 LOC108434915 coding downstream 124979 3144487 ~ 3160693 (+)
LOC103029856 cacng2a,cacng2,LOC107680886,LOC107561356,LOC107687643,LOC107732897,LOC107729558,LOC108434911 coding downstream 279830 3299338 ~ 3423252 (+)
ifi35 NA coding downstream 553734 3573242 ~ 3587765 (+)
G7466 NA non-coding upstream 40679 2978240 ~ 2978439 (+)
G7465 NA non-coding upstream 40944 2977850 ~ 2978174 (+)
G7447 NA non-coding upstream 89580 2926321 ~ 2929538 (+)
G7448 NA non-coding upstream 90441 2927539 ~ 2928677 (+)
G7413 NA non-coding upstream 140843 2877604 ~ 2878275 (+)
G7485 NA non-coding downstream 56217 3075725 ~ 3136794 (+)
G7492 NA non-coding downstream 120573 3140081 ~ 3144378 (+)
G7518 NA non-coding downstream 143625 3163133 ~ 3171573 (+)
G7526 NA non-coding downstream 168806 3188314 ~ 3192875 (+)
G7531 NA non-coding downstream 239686 3259194 ~ 3263791 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 176904 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 460774 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 938577 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 971555 2039387 ~ 2047563 (+)
G7109 NA other upstream 1673687 1340206 ~ 1345431 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other downstream 429713 3449221 ~ 3452666 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 904777 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1733288 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 2166026 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 2312557 5332065 ~ 5339089 (+)

Expression


Co-expression Network