cartpt (cartpt,LOC107679585,LOC107574592,LOC107666283)


Basic Information

Item Value
gene id cartpt
gene name cartpt,LOC107679585,LOC107574592,LOC107666283
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40228839 ~ 40230309 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>NM_001291260.1
ATCAGCACCATGGAGAGCTCGAGCGTGCGGGGCgcactgctgctgttgctgctgctcaGCGCGAGCGCACAGGACGCGGACACGGACAACGAGGTGGAGCTGGACACCCGCGCCATCCGGGACTTTTACCCCAAAGACCCCAACCTGACCAGCGAAAAACAGCTGcttGGCGCTCTCCACGAAGTGCTTGAGAAGTTGCAGACCAAAAGAATCCCACCTTGGGAGAAGAAATTTGGGCAGGTTCCcatgtgTGATGTTGGAGAGCAGTGTGCGGTGAGGAAAGGCTCGCGCATTGGGAAGATGTGTGACTGTCCCCGAGGAGCATTCTGCAACTTCTTCCTGCTCAAGTGCTTGTGAGGGGCAAAGCGTGTCCAGGGGCTTTTGAAGGAAAAGGGGAGGTGGGGAGGGGcagatctcacacacacacactgtccagaAGTATCAAAGTCATTtgtatagatatttttttaagtgcgaGAATTCACCAAAAAGTCGGAACTgttttttctgtaaagttgtGTTCCTGTTCTGAAGTGTTGCACACCTGTAATCATGTCCTCGACGATGTAACCTTCATGTTTTTGTGGATTAAAGTGACCCATAACGTCCTTTTGTAAA

Function

symbol description
cartpt Predicted to enable neuropeptide hormone activity. Involved in several processes, including negative regulation of bone resorption; positive regulation of epinephrine secretion; and positive regulation of transmission of nerve impulse. Located in extracellular space and secretory granule. Implicated in obesity.

NR:

description
cocaine- and amphetamine-regulated transcript protein precursor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009267 cellular response to starvation biological_process
GO:0032099 negative regulation of appetite biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0008343 adult feeding behavior biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005615 extracellular space cellular_component

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001291260.1 True 618 mRNA 0.51 3 40228839 40230309

Neighbor

gene id symbol gene type direction distance location
LOC103046604 LOC108418995,LOC108268792,LOC107753548,LOC107666287,LOC107716682 coding downstream 8105 40165500 ~ 40220734 (-)
LOC103029855 NA coding downstream 130879 40076837 ~ 40097960 (-)
LOC103047731 abhd2,abhd2b,LOC108418794,LOC107753686,LOC107665722 coding downstream 194749 40022537 ~ 40034090 (-)
LOC103022288 ckmt1,LOC103022288,LOC108418758,LOC107753597,LOC107661454,LOC107554962,LOC107696262 coding downstream 220245 39995508 ~ 40008594 (-)
pdia3 pdia3,LOC107696263,LOC107716732,LOC107753598,LOC107573964,LOC107661453 coding downstream 240478 39982794 ~ 39988361 (-)
c24h15orf40 NA coding upstream 16297 40246606 ~ 40249542 (-)
LOC103042952 LOC103042952,LOC107695597,LOC107577899 coding upstream 71850 40302159 ~ 40307383 (-)
LOC103043462 sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409 coding upstream 78185 40308494 ~ 40312741 (-)
actr6 actr6,arp6 coding upstream 82575 40312884 ~ 40317812 (-)
gtse1 NA coding upstream 88480 40318789 ~ 40325440 (-)
G210959 NA non-coding downstream 65289 40163333 ~ 40163550 (-)
G210949 NA non-coding downstream 90531 40137876 ~ 40138308 (-)
G210937 NA non-coding downstream 119916 40106604 ~ 40108923 (-)
G210934 NA non-coding downstream 154071 40072385 ~ 40074768 (-)
G210868 NA non-coding downstream 173621 40054723 ~ 40055218 (-)
G210994 NA non-coding upstream 141220 40371529 ~ 40372033 (-)
G211001 NA non-coding upstream 221933 40452242 ~ 40452572 (-)
G211025 NA non-coding upstream 268985 40499294 ~ 40500630 (-)
G211026 NA non-coding upstream 270890 40501199 ~ 40504302 (-)
G211029 NA non-coding upstream 281327 40511636 ~ 40512067 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 288784 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 432896 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 596663 39613715 ~ 39632176 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 688023 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 3024454 37165034 ~ 37204385 (-)
G210991 LOC103042126,LOC108416825 other upstream 130949 40361258 ~ 40363237 (-)
G210995 NA other upstream 142496 40372805 ~ 40378353 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 328375 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 928921 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 1076637 41306946 ~ 41310751 (-)

Expression


Co-expression Network