CI01000009_11342784_11347580


Basic Information

Item Value
gene id CI01000009_11342784_11347580
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11342784 ~ 11348827 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_11342784_11347580.mRNA
ATGGGACAACTAAGTTCGCGACCAAAGAAAGCGACTTGGGTGGAGCATGTACACGAACAACAACCCTGTGTACTGCTCAAACACACCACCATCACGGCAGAAAACCATCCTCATCAGCTCGATGAGACGCCTGGTGGTGCTGGTGAGATTGATGAAGGGAGAAATGAGGCAGGGAGAGACGAGAAAAAGAAGTCGAAGTCTGGGAGATTCCGCCCTTTTCGCAAAAGAGCTGGAAAATACTACCTGGTTCAGGCTGAGAAGGTGTATCAGAGTGAGGCGGGATCATACCAGAAAATTACTAATGATCACACTCCTCTACAGCACATCACTATTGTAGAGAACCCTGATCATCAAGAAGCTCCCGCCTCTAAAGTCCTCCCTGATGCTGAGAAACAGCTGGAGCAGGACGTCTTCCAACCTCAGGATGTCGACGCTCCACTTAGCTCGGCTGAAGATGAGAGCATGGAAGAGCTGGACAAGGATCAGGTGTCTCTACCACACATCGTGGAGATCCCTGATCCTCAAGAAGCTCCAGCCTCTGAAGTCCTCCTCCCTGATGCTGAGGAACAGCTGGAACAGGACGTCCTCCAACCTCAGGACGTTGACACTCCAGTTTGTTCGACTGAAGATGACAGCATGGAAGAGCTGGACAAGGATCAGACTTCTCCACCACACATTGGAGAGATCAATGATCCTGAAGAAGCTCCAGCCTCTCAAGTCCTCCATGCTGCTGAGGAACAGCTGGAGCAGGACGTCCTTCAACTTCTGGATGTCGACGCTCCAGCTGAAGATGACAGCATGGATGAGCTGGACAATGGCCACATTTGCTGGCGATATGAATTTGGACACAAGCTGGGTCAAGGAGGGTATGGCTATGTGCAAGCAGGGACTCGCTGCAAGGATGGCGTTAAGGTGGCTTTGAAAATTGCAGAAAAGAAGCCAAATACGCGATATATATTAGTGCCTGGCCATCCCAAACGCCTCCCCATGGAGATTGGCCTGACATTAATGGCCAATAAGGGCCCCAGAGTTCCGCAGATAATTAAACTGCTGGACTGGCAGGACGACCCGGACCACTACATCATGGTCCTGGAACGCCCCATCCCCTGCATGCACTTGTTAAGCTTCATAAAGCTTCAAGGAGGAAGTCTCGATGAGAAGACAGCAAGGCACGTTATGCAGCAGGTCATTCACGCTGCTATCATTTGCTGTGAGCGCGGAGTCTTCCATCGAGATATAAAACTGGAGAACGTGCTGATAAACCAGGACACCTTGGAGGTCAAACTGATTGATTTCGGGTGCGGTGAGCTCATGAAGGAGTCTGCCTACGTGACCTTCCGTGGCACAAGAGTGTACTGTCCACCGGAGTGCCATGTCAACGGCGGTTACCATGCAAAGCCGGCGACAGTGTGGTCACTGGGGATCCTCCTGTTTGCCGCGGTGTGTGGGTATTATCCCTCAGACAACAACTTGCGTATGATCAGCGAAGACGAATGGTGCAAACCTGGCCTGTCACAAGAATGCTGCCAGATGATTAGAGCTTCTCTGCAACCTGATCCAGAGCAGAGAATTATTCTGGAAGAGATGCGGCTCCATGACTGGTTTAAGTATAAGCCAAAAGTCCTACAAGACATATATCCAAATATGTCTTCTGAAAAAGCACCTATAGAATCTGATGAATTAATCAGCGTTAGCATCAAGTCAATGCATTACTTCTTGATAGCATTATTTACCCTGATCTTGAAAAACCAGTCTTTATTTCTAACTTAAATGCCTCCAAAACACACACCAATCTCAAAACAACAGGTTCCCACATTTCCTATAATCTGAAAGCACGGCTGGTGGTGTATTTTGACAGACATGCTTAAAATTGAACATAATATGACTGTTAGAGTCACATTTCACACGTTTAGTTCACACTGTACGATTTTGGCCAGGATTGGGCAAAAAGCGAAAGTGTTTGATAGCTAGTTTTACATGTTCACCAATAGCTGATTGCTCAGTCCACCGCTCACCCCTCCCTTCTGAAGCACATAGAGAAGCTACGGTGGCCGACACAGGACAAAGATGTCATCGTCTGAGACAGCAGAGAGTAGCCATTCAAGCAATGAGGTTTCTTTTTACTTTTAACAAAGAATGGTCTCTGCTTCTAATAAACACTAACAAAGAAGAACAACAACATAGTGATGAAACTCTGTAGAGCAGTTTGTCTGTTTAGGGCTGCTGTAGAAACATGCCGGCGCAAAATGGCGACTTAACATGAAAGGAGACTCGTGGTGTATGTAGATAGAAATGGCTCATTCCAAGGTAATAAAAACTTTATACACCACTGAAAACATAGTTATGTATATTATATTGCATTTCTGTCAATAGATCCTCCTAAAATTTACACACTGCACCTTTAAATGGAAAGTTAATCAAAAAATAAAATTCTGTCATCGTTTACTCACCCTCATGTTGTTCCAAACCTGTATGAGTTTCTTTTTTTCTCCTGAACACAAAAAGAAGATATTTTGAAGAATGTTGGTAACCAGACAGTTGACTGTAGCCATTGACATCCATAGTGGGTTTTTTTCCTACTATAGAAATCAGTCGCTATCGTCAACTGTCTAGTTACCAACATTTTTCAAAATATCTTCTTTTGTGTTCAAAAGTAAAAGTTTCTGCACCAATTTAGTTTTTTATGGTCATTTTCCACCATCTCTCTGACTGTTTTTTGCTAAATCTAGATACATGAGTCGACCTCTCTCATCAATTAGTCGGTTGTTGAATGAGTAGTCAATTAGTTGACCATTGTGATCCATGTCTAGCAGCCTAATTAAGAATGATATTATTTTACATGGTGTGGATGATTAAGATCGCGTCCAGTACGAATACTTTATCTTAGTAACCCTCCCAATTATCGGACCCTTTCTGTCTGAGAGTAAATTAATAATATCTAATACAGAATATAATACTACTGACTGCTAATAGCTTTTGCATGAAGCAGTGACTTTTTAATACATACTTTACAAATA

Function

NR:

description
LOC562179 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_11342784_11347580.mRNA True 3017 mRNA 0.44 12 11342784 11348827

Neighbor

gene id symbol gene type direction distance location
CI01000009_10644080_10691030 CPS1 coding upstream 650734 10644080 ~ 10692050 (+)
CI01000009_10583435_10617169 MAP2 coding upstream 725615 10583435 ~ 10617169 (+)
CI01000009_10555555_10560050 NA coding upstream 782386 10554350 ~ 10560398 (+)
CI01000009_10491868_10508777 NA coding upstream 833775 10491401 ~ 10509009 (+)
CI01000009_10477699_10485965 NA coding upstream 855431 10476658 ~ 10487353 (+)
CI01000009_11434018_11455253 NA coding downstream 84965 11433792 ~ 11455635 (+)
CI01000009_11493236_11526914 VWC2L coding downstream 144409 11493236 ~ 11526914 (+)
CI01000009_11669960_11702667 HIBCH coding downstream 321133 11669960 ~ 11703539 (+)
CI01000009_11711277_11714191 MSTN, GDF-8, MSTNB coding downstream 362333 11711160 ~ 11714694 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 coding downstream 412779 11761606 ~ 11766944 (+)
G56784 NA non-coding upstream 85814 10985244 ~ 11256970 (+)
G56843 NA non-coding upstream 228121 11111237 ~ 11114663 (+)
G56744 NA non-coding upstream 410025 10919860 ~ 10932759 (+)
G56725 NA non-coding upstream 415913 10886439 ~ 10926871 (+)
G56695 NA non-coding upstream 482630 10830992 ~ 10860154 (+)
G57556 NA non-coding downstream 21161 11369988 ~ 11370472 (+)
G57557 NA non-coding downstream 22568 11371395 ~ 11371768 (+)
G57564 NA non-coding downstream 37527 11386354 ~ 11386583 (+)
G57567 NA non-coding downstream 48176 11397003 ~ 11397339 (+)
G57589 NA non-coding downstream 82517 11431344 ~ 11431637 (+)
CI01000009_09853929_09854476 SAP18 other upstream 1486197 9853929 ~ 9856587 (+)
G56100 NA other upstream 2212498 9129300 ~ 9130286 (+)
G53651 NA other upstream 5094392 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 5409983 5931718 ~ 5943899 (+)
G53388 NA other upstream 5803730 5522242 ~ 5540638 (+)
G57811 NA other downstream 585115 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 1083731 12432538 ~ 12436017 (+)
G57682 NA other downstream 1476642 12825469 ~ 12892339 (+)
G57691 NA other downstream 1557617 12906444 ~ 12918465 (+)

Expression


Co-expression Network