selenoh (selenoh)


Basic Information

Item Value
gene id selenoh
gene name selenoh
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 6402156 ~ 6405288 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU276479
AATCGGATCATTTGTTTTTAGTACATGGTTTAGTGTTATTAGGCTCGATTGACTCGTTTACAGGAGTCGTTTAAGGACAGCAGATTCTTCCACAGTTCGCGCCAAAAACAGTTACAGCGGCGTCCTAAAATGCCTCCTCGCGCTAAAGCAGgtcGTGGGGCAAAGCGCAAGGTGGATGCTGTTGTGGAGTCGGAGCCAGAGGCAAAGAAGGATAAAACAACAGATGCCGAACAGGACGAAGGCCAAAGAGTGGTCATCGAACACTGTAAAAGCTGACGAGTGTATGGTCGGAATGCCGACATGGTCCGTGAGGCTCTCCTGGCTGTACATCCCGAGCTGCGTGTGGTGCTCAACCCCCAGAAGCCTCGTCGAAACAGCTTTGAGGTCACCCTAATGGAAGGAGACAAAGagGTGGTCCTCTGGACTGGCATCAAGAAGGGTCCTCCCCGTAAACTAAAATTTCCAGATCCTGCTGAGGTTGTGACTGTGCTTGATGATGCCCTGAAGAGCAACTAGAGATTAGTGAGGAGATGGTCAATCGTCTTTGGTTCTATGTATGCATAATGATGAGGATGGACCAAATGGACGACTTCCAGTCTGTTCTCTGATGTTTTTTGGCATCTAGACCCTGGATGATTGCAGCCTCCTTGTGATCTCTTGCTTAACCTCTTAACTCCAATTCTTGTTATTTAGATCTTGTGATctattctctcactttttctgtttttctgtgtggTTTTCTGTATGTTATGTCATCTAATAAAGTAGGATTTTTCAATATAGCAGGATACATTGGACCAACACTGGAAATTGTTCAGTGGGAATATACAATCCTTTTTAATGGTTTTGCGGTTTGGCCTCGCGTGCATGGCTAACTGAGTGATTCtgcttttgtaaaaaataaaaccagtcTGGATCTGTAGAGTTGAGGTTACAGATGTCTTGCCTTCTAACTGAACTGTTTTAGTCTGTTTTCTgttctcattaaaaaaataataataataaagcttcTA
>XM_015601904.2
AACCCAGAGGAGATGCTGAAGTGAGTATTCTCTCTATAAAAGCTCCCATCGGCTCAGTAAAGGAAAGATTCATTTTGGTGAATCGGATCATTTGTTTTTAGTACATGGTTTAGTGTTATTAGGCTCGATTGACTCGTTTACAGGAGTCGTTTAAGGACAGCAGATTCTTCCACAGTTCGCGCCAAAAACAGTTACAGCGGCGTCCTAAAATGCCTCCTCGCGCTAAAGCAGgtcGTGGGGCAAAGCGCAAGGTGGATGCTGTTGTGGAGTCGGAGCCAGAGGCAAAGAAGGATAAAACAACAGATGCCGAACAGGACGAAGGCCAAAGAGTGGTCATCGAACACTGTAAAAGCTGACGAGTGTATGGTCGGAATGCCGACATGGTCCGTGAGGCTCTCCTGGCTGTACATCCCGAGCTGCGTGTGGTGCTCAACCCCCAGAAGCCTCGTCGAAACAGCTTTGAGGTCACCCTAATGGAAGGAGACAAAGagGTGGTCCTCTGGACTGGCATCAAGAAGGGTCCTCCCCGTAAACTAAAATTTCCAGATCCTGCTGAGGTTGTGACTGTGCTTGATGATGCCCTGAAGAGCAACTAGAGATTAGTGAGGAGATGGTCAATCGTCTTTGGTTCTATGTATGCATAATGATGAGGATGGACCAAATGGACGACTTCCAGTCTGTTCTCTGATGTTTTTTGGCATCTAGACCCTGGATGATTGCAGCCTCCTTGTGATCTCTTGCTTAACCTCTTAACTCCAATTCTTGTTATTTAGATCTTGTGATctattctctcactttttctgtttttctgtgtggTTTTCTGTATGTTATGTCATCTAATAAAGTAGGATTTTTCAATATAGCAGGATACATTGGACCAACACTGGAAATTGTTCAGTGGGAATATACAATCCTTTTTAATGGTTTTGCGGTTTGGCCTCGCGTGCATGGCTAACTGAGTGATTCtgcttttgtaaaaaataaaaccagtcTGGATCTGTAGAGTTGAGGTTACAGATGTCTTGCCTTCTAACTGAACTGTTTTAGTCTGTTTTCTgttctcattaaaaaaataataataataaagcttcTATATTTGTA

Function

symbol description
selenoh Acts upstream of or within several processes, including cell redox homeostasis; liver development; and pancreas development. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pectoral fin. Orthologous to human SELENOH (selenoprotein H).

NR:

description
selenoprotein H

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU276479 False 1013 lncRNA 0.44 5 6402164 6405208
XM_015601904.2 True 1101 mRNA 0.44 5 6402156 6405288

Neighbor

gene id symbol gene type direction distance location
clp1 clp1,LOC107750374,LOC107680590,LOC107749782,LOC107594950 coding downstream 851 6393195 ~ 6401305 (-)
LOC103038082 LOC108424155 coding downstream 34969 6361388 ~ 6367187 (-)
LOC103033238 med19,med19a,LOC107745077,LOC107684830 coding downstream 41440 6344595 ~ 6360716 (-)
LOC103038710 ssrp1a,LOC108269282,LOC108424210,LOC107737799,LOC107684835 coding downstream 158698 6226632 ~ 6243458 (-)
LOC107196999 NA coding downstream 180156 6210816 ~ 6222000 (-)
mif mif,LOC107680670,LOC107594949,LOC107594906 coding upstream 2191 6407479 ~ 6409639 (-)
LOC103037435 NA coding upstream 27097 6432385 ~ 6435973 (-)
LOC111188205 LOC108424126 coding upstream 30242 6435530 ~ 6444450 (-)
LOC111195822 NA coding upstream 38918 6444206 ~ 6457539 (-)
LOC111195712 NA coding upstream 598760 7004048 ~ 7013680 (-)
LOC111195709 NA non-coding downstream 113224 6269259 ~ 6288932 (-)
G203745 NA non-coding downstream 126864 6255462 ~ 6275292 (-)
G203740 NA non-coding downstream 191575 6209914 ~ 6210581 (-)
G203738 NA non-coding downstream 196300 6205157 ~ 6205856 (-)
G203737 NA non-coding downstream 199097 6202003 ~ 6203059 (-)
G203761 NA non-coding upstream 11980 6417268 ~ 6420967 (-)
G203762 NA non-coding upstream 16662 6421950 ~ 6486904 (-)
G203763 NA non-coding upstream 17493 6422781 ~ 6424265 (-)
G203783 NA non-coding upstream 108663 6513951 ~ 6553987 (-)
G203818 NA non-coding upstream 176034 6581322 ~ 6581736 (-)
LOC103032694 zdhhc5,zdhhc5b,LOC107594917,LOC107750372 other downstream 9390 6376735 ~ 6392766 (-)
G203734 NA other downstream 211041 6185773 ~ 6191115 (-)
stx3 stx3,LOC106516362,LOC103147491 other downstream 243647 6121487 ~ 6158509 (-)
ids ids other downstream 1019388 5368819 ~ 5382768 (-)
G203065 NA other downstream 3919842 2481727 ~ 2482314 (-)
trnai-uau_40 NA other upstream 124751 6530039 ~ 6530131 (-)
trnai-uau_41 NA other upstream 125299 6530587 ~ 6530679 (-)
trnai-uau_42 NA other upstream 126288 6531576 ~ 6531668 (-)
trnai-uau_43 NA other upstream 127149 6532437 ~ 6532529 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other upstream 189090 6594378 ~ 6673928 (-)

Expression


Co-expression Network