CI01000009_11875722_11882183 (STAT1B, STAT1)


Basic Information

Item Value
gene id CI01000009_11875722_11882183
gene name STAT1B, STAT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11875486 ~ 11882921 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_11875722_11882183.mRNA
GTATTTATAATCATTTTATTTTGCGTAGCAGTAGCACTTTGCACAAAATTGAAAAAAATATTTCTCGCATTAGGAGCACTTGGAGGATGTTGTTTGTTTACATAGCTATGATCGTATCCAACACCCTGAATGAGGAGAAGACTCTTAATTCTCAAGTAAATCATTCATACTTTTTTAATATAGCCTACTGCCATTCGTCGAAGTGCATGCCTAATCTAATCTAACTGAGTATAACGATGGAACAACAAAAAGAGTTGGACCATAAAGTCAACAAGCTGAAGAAGAGTGTGCAGGAAATAGAACAGGACATTCAGGTTTTGGAAGACCTGCAAAACGAGTATGACTTCAAGAGAAAGACTTTGGAGGGTCAAGTGGAGGTTGAAACAAAGGGTCAGACAACGAAAGAGAACCAACCTGAGGAGATGACCATTAGACAAATGTTTACTAGCCTAAACATAAAAAGAGAGGTGGTGATAAAGGAAATGGCTAATGTACTGACTCTAGCAGAGCAGATCCAGCTCACACTCATATCAGATGAGTTACCCGAGTGGAAGAAGCGGCAGCAGATGGCTTGCATCGGTGGTCCGCACAACACTTGTCTGGACCAGCTGCAGAGCTGGTTCACAGTGGTGGCAGAGTGTCTGCAGCAGATCCGTCAGCAGCTGAAGAAAGTTCAGGAATTGTTCTCTTGTGGTGGAGAGACAGCCGTGCATGCCGATGCATCCCCAGAGACCCTTGGTGTTGAAGATTGCAGTTCAGTTCACGGTCAAGATCAGATCTTAAAGGAGAAGAGACCTAGCAACAAAACAAATGAGTGGTCTCTCGCTGTGTATGAGGAGCTGCACTTATTAAGTTTTGACACGCAGCTCATTCTGCCTGATCTATGCATTGATTTATCGAATCTGACGTTCTTCTTGAATCCGCCACCAGTGAAATGGGAGCAGCTTTCAAAAGTCATAAGCTGGCAGTTTTCTTCGGTCACGAAACGAGCGCTGAACTCTGAGCAGCTGAGAATGCTGGCCAACAAACTTCTTGTGACAGCTGTCATTGTGGAGGAATTACCATCACATGGGTGGAGCATTCACAGGACGGTGTGTGCTGGTTTGAACTGGAATGTTTTATTAAATGTTCTGACAAAGATCTTGGTGTGTTTGAAATATCTCTTACGAGATTATTTTGTCAGCACAGGTGAACCTGTGGTCCGTTCAACAAAGCCATACACAAGAGTAGATATGAATAGAATACCTTCACCAAACTTCATCCGTGACTATACCATCACCACTGGAGAGAAGGATCCAGTGAATCCCCTCAACTACCTTTACCCAGACATCCCAAGAGACGTCGCCTTTGGTCGCTACTATACCAGCGCATCTGATGCTCTAGGAGGGATGAATGAAAATCCAGGACAGTACTACAGCACATCTGGACATGTTCTTGTGAATTGTCAGGGTCATCTGACCTAAAGGATTTAAGCTTTGAACTGGTAGAACATTAAGTTAGCAATGCCAAGCTTGTGGGTTTGATTCCCAGAGAACTGATAAAATGTATACCATGAAGTTGTTTTGGATCCAATGCATAAATGTAGAAAAATAATCTTATTGTGTTAGACGAGTATCTCTTTTACTTTTGCTCATGGTTATTAAATTTCAGAGCATAACTCATCTTGTTTCAGCTCTGACCATGACAACTGATTGTTGAAGTTGTGCTATTACTTTTTAAGATGTAGATATACATTAAAAATACAGTGGACAAAATTACATAAAACACTGAAATTCTGCTTCGGTGAGGTTATTTGTATGAGAAAATGACACGCTTTTAATTATCAACACTTTTTTTTTATTATTATTATTATTGCACATAAAAGCTAAATCTTTATCTACCATTGCTTTAATTGTACATGTACACACACCAACTTTAGTCAGCCAGATACAGTGTAATATAAATCAGAAAAAATATCTGCTTCAATCTGATTGTATCTAGGTGAATACTGAAAAGTGTTAAAGTGTCTTTAAAATAGTTTACATTCATTACTTTGACATGAACTTTTTCATTTTTGTCCAACTATCTTCAAGTGTTTGGTCCGAGTGAACAGGTTTGACATCTTTCCACTGCTAACACAAATGTCTTTAGAAACTACATTTACAGTAATTTAACACTTCATCAATTCAAATACATGGTGATAATATAGAATATTGTATCCA

Function

symbol description
stat1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasm and nucleus. Is expressed in cardiovascular system; intermediate cell mass of mesoderm; kidney; and lateral plate mesoderm. Human ortholog(s) of this gene implicated in breast cancer (multiple); immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Orthologous to human STAT1 (signal transducer and activator of transcription 1).
stat1 Enables several functions, including RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; enzyme binding activity; and promoter-specific chromatin binding activity. Involved in several processes, including cellular response to cytokine stimulus; macrophage derived foam cell differentiation; and positive regulation of macromolecule metabolic process. Located in several cellular components, including chromatin; nuclear lumen; and perinuclear region of cytoplasm. Part of protein-containing complex. Colocalizes with nucleus. Implicated in breast carcinoma; immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Biomarker of angiomyolipoma; breast cancer; hepatitis C; lymphangioleiomyomatosis; and nephroblastoma.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11220 STAT1; signal transducer and activator of transcription 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_11875722_11882183.mRNA True 2201 mRNA 0.39 11 11875486 11882921

Neighbor

gene id symbol gene type direction distance location
CI01000009_11835682_11873220 STAT4 coding upstream 2156 11835682 ~ 11873330 (+)
CI01000009_11803818_11808988 SLC40A1 coding upstream 66251 11802384 ~ 11809235 (+)
CI01000009_11789703_11791511 NA coding upstream 83750 11789703 ~ 11791736 (+)
CI01000009_11769442_11773619 OSGEPL1 coding upstream 101867 11769442 ~ 11773619 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 coding upstream 109155 11761606 ~ 11766944 (+)
CI01000009_11892226_11892558 NA coding downstream 9305 11892226 ~ 11892677 (+)
CI01000009_11993879_12004644 NEMP2 coding downstream 110723 11993644 ~ 12004765 (+)
CI01000009_12022660_12022944 NA coding downstream 139639 12022560 ~ 12023388 (+)
CI01000009_12028975_12032758 NA coding downstream 145574 12028495 ~ 12033037 (+)
CI01000009_12050866_12109305 SPEG coding downstream 167852 12050773 ~ 12110098 (+)
G57792 NA non-coding upstream 40526 11834738 ~ 11834960 (+)
G57719 NA non-coding upstream 52955 11815069 ~ 11822531 (+)
G57790 NA non-coding upstream 87702 11787576 ~ 11787784 (+)
G57789 NA non-coding upstream 88160 11786904 ~ 11787326 (+)
G57787 NA non-coding upstream 94919 11780329 ~ 11780567 (+)
G57813 NA non-coding downstream 55457 11938378 ~ 11938639 (+)
G57724 NA non-coding downstream 284610 12167531 ~ 12168221 (+)
G57737 NA non-coding downstream 288442 12171363 ~ 12172140 (+)
G57850 NA non-coding downstream 305624 12188545 ~ 12188820 (+)
CI01000009_12198114_12221988 NA non-coding downstream 314484 12196699 ~ 12221993 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2018899 9853929 ~ 9856587 (+)
G56100 NA other upstream 2745200 9129300 ~ 9130286 (+)
G53651 NA other upstream 5627094 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 5942685 5931718 ~ 5943899 (+)
G57811 NA other downstream 51021 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 549637 12432538 ~ 12436017 (+)
G57682 NA other downstream 942548 12825469 ~ 12892339 (+)
G57691 NA other downstream 1023523 12906444 ~ 12918465 (+)
G57701 NA other downstream 1123722 13006643 ~ 13023138 (+)

Expression


Co-expression Network