G204839


Basic Information

Item Value
gene id G204839
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 12372552 ~ 12374101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU277875
TATAAGAcagttctaaaataaaaatgtgaaaatgtgaatacccaatcatgagtacagtgtactttaatgtaagcaaggttggggaaatgttaatataaataattaagttgttgaataatgtcgGAGAGGTATGTGACTGGATAGATGATTAgagaatttagagaatttaataaagggattatgggGTTGGTtagcaaaacaaattaaaaataaaagtaactggaaattccaaaatatactatgccatgcagtactgctgtgtaagatgtcctcagagcaggacaaataaacatggtttcttgtttgattgttaaataaataagtttaataaatagaaaatgctacatagtgaatagtgaatgaattaatgagtgagccattccaaacacagctttttatCAGGTGATTTAGTCAATTATCTTACTATTCGTTTCTCATTCAGACTGATCTCAGTTCAGTCCTAGCTGAATGAGACTTATATAAGACGGATGtaatatctaatttctctatgTTACATTTTGATCCTCATAAGAGGGATAGTTGATTTCAGAAACCAATGAGAAAAGaccttatttatttgaaaatgaaggtctttctcattttaaataaggggaaataaaatgtgtttgaaaaTGCAGCTCTCTGTTTTGCTTTACAGTATTAAATTAGACTAGAAAGAGATCTGGAAAACGGCATAGATTTAGTTTTCATGCTTATACAATGCCAcctataaaacaaatgcataattttctggctgtagcatgaacaaaatcagctaagcaatataaaattgtttcatcTGCATAATGGTAAAGTTTGCAATCTGAAGAAGCAGAgccagtaatataatttaacaaataataaaccatgGGTACTCGGTGCCTTGCACAGGCTTTCACGGCGAACACCAGAGTGTGAGTTTGTGACAGTGTGACATACCTGGGTTTGTGCTCCCTGCAGAAACACTACAGCACTGAATGTTGATGAAACAGTGCTGCTACgctgtgtgtggttcagtggGCTAGGCTGGTTAGCCAAAGACGGGTAAGATCCCAACATATTACACAGGGACAACCTAAGACAGGcacagtctcgatctgaccaccaCATGCATGTTAACAGAAAACGGAGAAAACATCGTGGAAGGGAAGCGCAGCCCAGGGGGagagGTAAATAGATGATCATTATTGCCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277875 True 1195 lncRNA 0.36 3 12372552 12374101

Neighbor

gene id symbol gene type direction distance location
LOC103029424 LOC108439350 coding downstream 85133 12284069 ~ 12287419 (-)
LOC103029000 LOC108439349 coding downstream 90977 12276314 ~ 12281575 (-)
LOC111195717 NA coding downstream 99567 12266801 ~ 12272985 (-)
LOC103029957 poc1b,LOC107561860 coding downstream 118521 12195908 ~ 12254031 (-)
dusp6 dusp6,LOC107574886 coding downstream 194417 12173364 ~ 12178135 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding upstream 34634 12408735 ~ 12415936 (-)
ptcd3 NA coding upstream 72625 12446726 ~ 12462753 (-)
sqstm1 sqstm1 coding upstream 148674 12522775 ~ 12528579 (-)
LOC103033266 NA coding upstream 519577 12893678 ~ 12901396 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding upstream 885202 13259303 ~ 13262496 (-)
G204848 NA non-coding downstream 22366 12349979 ~ 12350186 (-)
G204847 NA non-coding downstream 42328 12329967 ~ 12330224 (-)
G204837 NA non-coding downstream 66620 12305324 ~ 12305932 (-)
G204755 NA non-coding downstream 110159 12260295 ~ 12262393 (-)
G204750 cep41,LOC107574848,LOC107679575 non-coding downstream 112792 12259336 ~ 12259760 (-)
G204840 NA non-coding upstream 938 12375039 ~ 12375422 (-)
G204861 cav1,LOC107574842,LOC107679630,LOC108269231,LOC107716666,LOC107574005 non-coding upstream 20323 12394424 ~ 12400830 (-)
G204883 NA non-coding upstream 71168 12445269 ~ 12445726 (-)
G204874 polr1a,LOC103373600 non-coding upstream 104653 12478754 ~ 12485085 (-)
G204905 NA non-coding upstream 331138 12705239 ~ 12711529 (-)
G204671 NA other downstream 788478 11583200 ~ 11584074 (-)
G204584 NA other downstream 1727865 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 2613485 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 4628980 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 5580561 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 1359612 13733713 ~ 13739921 (-)
G205375 NA other upstream 1370252 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 1528102 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 1568622 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 1600576 13974677 ~ 13978450 (-)

Expression


Co-expression Network