G204840


Basic Information

Item Value
gene id G204840
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 12375039 ~ 12375422 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU277876
CTGCTCGTGCACCGGGACCTCTAGACCCTGCAAGAAAAGCGGAGGACGctcttgggttaaaaaaagaaacccaaCCTTAGAACCTCAACTGTTTTTTAGAGGAAAAGGCGTTTTCTCTGGGGGTCGAGGGGTGTCCGGGGGCCGCTGCAGCCGCACCACGTGtgagtatatttttatatctttcttCGTCTGGTTTGAGCCCCCTGGCACACAGTCTGAGTTGATGTGAAGAGGTTAGAGGCAAAAGGAGGaacctgtaattttttttggtgcTGTGTGTTTGCCTCAATCCAAGATTTGGGGCATAGCCCAGAAAAAACTGGTTCCTGGGGGGCCGGATAACCCGCCTTTGTATGACGATATTTAAAGGTTAAAGATTTTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU277876 True 384 lncRNA 0.48 1 12375039 12375422

Neighbor

gene id symbol gene type direction distance location
LOC103029424 LOC108439350 coding downstream 87620 12284069 ~ 12287419 (-)
LOC103029000 LOC108439349 coding downstream 93464 12276314 ~ 12281575 (-)
LOC111195717 NA coding downstream 102054 12266801 ~ 12272985 (-)
LOC103029957 poc1b,LOC107561860 coding downstream 121008 12195908 ~ 12254031 (-)
dusp6 dusp6,LOC107574886 coding downstream 196904 12173364 ~ 12178135 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding upstream 33313 12408735 ~ 12415936 (-)
ptcd3 NA coding upstream 71304 12446726 ~ 12462753 (-)
sqstm1 sqstm1 coding upstream 147353 12522775 ~ 12528579 (-)
LOC103033266 NA coding upstream 518256 12893678 ~ 12901396 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding upstream 883881 13259303 ~ 13262496 (-)
G204839 NA non-coding downstream 938 12372552 ~ 12374101 (-)
G204848 NA non-coding downstream 24853 12349979 ~ 12350186 (-)
G204847 NA non-coding downstream 44815 12329967 ~ 12330224 (-)
G204837 NA non-coding downstream 69107 12305324 ~ 12305932 (-)
G204755 NA non-coding downstream 112646 12260295 ~ 12262393 (-)
G204861 cav1,LOC107574842,LOC107679630,LOC108269231,LOC107716666,LOC107574005 non-coding upstream 19002 12394424 ~ 12400830 (-)
G204883 NA non-coding upstream 69847 12445269 ~ 12445726 (-)
G204874 polr1a,LOC103373600 non-coding upstream 103332 12478754 ~ 12485085 (-)
G204905 NA non-coding upstream 329817 12705239 ~ 12711529 (-)
LOC111195726 NA non-coding upstream 342191 12717613 ~ 12723744 (-)
G204671 NA other downstream 790965 11583200 ~ 11584074 (-)
G204584 NA other downstream 1730352 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 2615972 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 4631467 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 5583048 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 1358291 13733713 ~ 13739921 (-)
G205375 NA other upstream 1368931 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 1526781 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 1567301 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 1599255 13974677 ~ 13978450 (-)

Expression


Co-expression Network