G204861 (cav1,LOC107574842,LOC107679630,LOC108269231,LOC107716666,LOC107574005)


Basic Information

Item Value
gene id G204861
gene name cav1,LOC107574842,LOC107679630,LOC108269231,LOC107716666,LOC107574005
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 12394424 ~ 12400830 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU277900
TTCTTTTCATAGTTTAATGTGCATGGCGTGATGTGTACAGTAaaagcagagaagaagaattctaactttcatgtaaaaaaagtacaagtACAGCCTCCTTAGTGCCGAGGCACATTTAGGCACATATCACTTTACCATCCTCTCAGACAGCAGGTAGACAGAAAGTTGAAGTGAGCTTGATGACAGTATCAAATAAAAGTGCCCCCTTTCTGCAGCAGTCTCTGGGGCCTGAGACTTCATTTAGTTTGCCAGTCTTTGCCAGTGTGTGAGTCCGACAGTGAACAAATAAAGGAaccaaatgttgttttttttctttccaggcACTTAATTCAGCCTTCggcacaaacatacacaaaaacaaacaaacacacatgaaTAAAAAGGATGGATTCCAAATGTACTTCATCACGATCTCAGAGAAAAGCTGGTGTCTCGCTAAGGCTTTAGTGCTGTGGTGCATTTATGCTAAGGCTCAGTCTTTACTGATGCTAGAAAAGGCCTCAGTTGGTCTTTACTGTAAGTGTGATCAAGCCTAGTAAAGCAGGGGTCCAAGCGGCAGTTTTCAGGTAGTTCTGCTGTGTTCtatcactctctcgctctgtcactcaaaaaatacaaaaaagctgTTTCACGTTGACTGGTTAAAGAGTTGTGTGTGACCCAATGCCAGGTACAGTCTCTTTTGTTCGCTTATGCTGAGTTGACAAAGTTTTCGGCTGATTCACTGAGGTCAGCCCTTTTTTTAGCCTCGTGTTTGGACCGTGGTATAACAATGGTAGCATGCAGTGTCATGGGCAGTCTTGAAATCAGCAGGAACATGCCCACTTTATCAAGTTTATCacaaagaacataaaaaagacttttatcTAGAAGTTGGGGACACAAACGATGATACTCCACATAAACAAAAGATTTAAACTCTAGTAATGATTGAATAAATGATTGCAAGCATGAATGCAAGAATGAAGagggacaaaaaaaacagattcacaGCCTTACTTTAGTAGATAGGCTGATATGGTGCTTTCTTAGTGACAAAGGCTAACACATTACAAAAACCCAACATATAACAGGATTATTCCTATACATATAAAACATCCTTTGCCCCGGTGGACAGAATCAAGCTGGAGGAAGAACAAGACACTGGACAGAGAGGGGTGACCACTAACTGTAAGGCACCATAGAAACACAGTTAAGGCCCCCCCAACCTCCCCAAAATGATCTACTCTCCTCTTTTGAACCTCTTCCATATGAAGGTCACTCTTTATTTCCCTCCATCTGAGCTTCCGTCCTGCCCCCGCCCTACCCTCGCCCGTTTCCTCCTTCACTTTCTCTGCTCCTACACCACCTTGGTGGTGGTGATGCGCACACTGCTGAAGCATTTTCCAACAGCTTCGAATAATGGGTCACAGAACGTGTGCACACAAATGGAGTAGACCTGGCTCACGCAGTGGATCTCAATCAGGTAGCTCTTCAGGCACGGCACCACGGCCCAGATGTGCAGGAAGGAGAGAATGGCGAAGAAGATGCCCCAGATCAGAGCCAGTGGGATGCCAACCAGTGCCGTCAGGAGCCGGTAGAACCAGTACTTGGTGACCGTAAAGGTGGTGTAGCTTGCTTTCCATACACCATCAAAGCTGTAGGTGCCTGCAGGCTCGGCAATCACATCCTCAAAGTCCCTTTACTACGTGATCATTTAAGTGCTTTGGATCCCGGTTGACCAGGTCTATCTCCTTGGTGTGGACGTCCTGCATGGTCTTCTCGTTGATGCTGTCGTTATCCATGCTTTTGTTGTTGGGTTTGTAAATGTTCCCTTGCTTTCTGATGAACGGAGAGTGAATGTACTCCTGagagaacaacaacaaaatggAGAAAAGTTTCCAAACGTGAGAGAGGAGAGCAAGGAGCGACTCAGCACGTTACCCC
>TU277902
TTCTTTTCATAGTTTAATGTGCATGGCGTGATGTGTACAGTAaaagcagagaagaagaattctaactttcatgtaaaaaaagtacaagtACAGCCTCCTTAGTGCCGAGGCACATTTAGGCACATATCACTTTACCATCCTCTCAGACAGCAGGTAGACAGAAAGTTGAAGTGAGCTTGATGACAGTATCAAATAAAAGTGCCCCCTTTCTGCAGCAGTCTCTGGGGCCTGAGACTTCATTTAGTTTGCCAGTCTTTGCCAGTGTGTGAGTCCGACAGTGAACAAATAAAGGAaccaaatgttgttttttttctttccaggcACTTAATTCAGCCTTCggcacaaacatacacaaaaacaaacaaacacacatgaaTAAAAAGGATGGATTCCAAATGTACTTCATCACGATCTCAGAGAAAAGCTGGTGTCTCGCTAAGGCTTTAGTGCTGTGGTGCATTTATGCTAAGGCTCAGTCTTTACTGATGCTAGAAAAGGCCTCAGTTGGTCTTTACTGTAAGTGTGATCAAGCCTAGTAAAGCAGGGGTCCAAGCGGCAGTTTTCAGGTAGTTCTGCTGTGTTCtatcactctctcgctctgtcactcaaaaaatacaaaaaagctgTTTCACGTTGACTGGTTAAAGAGTTGTGTGTGACCCAATGCCAGGTACAGTCTCTTTTGTTCGCTTATGCTGAGTTGACAAAGTTTTCGGCTGATTCACTGAGGTCAGCCCTTTTTTTAGCCTCGTGTTTGGACCGTGGTATAACAATGGTAGCATGCAGTGTCATGGGCAGTCTTGAAATCAGCAGGAACATGCCCACTTTATCAAGTTTATCacaaagaacataaaaaagacttttatcTAGAAGTTGGGGACACAAACGATGATACTCCACATAAACAAAAGATTTAAACTCTAGTAATGATTGAATAAATGATTGCAAGCATGAATGCAAGAATGAAGagggacaaaaaaaaACAAACAGATT

Function

symbol description
cav1 Enables beta-catenin binding activity. Acts upstream of or within several processes, including animal organ development; regionalization; and regulation of defense response. Predicted to be located in Golgi membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and perinuclear region of cytoplasm. Predicted to be integral component of plasma membrane. Predicted to colocalize with caveola; focal adhesion; and sarcolemma. Is expressed in several structures, including cardiovascular system; ectoderm; integument; lateral line system; and tail bud. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); lipodystrophy (multiple); primary open angle glaucoma; primary pulmonary hypertension; and systemic scleroderma (multiple). Orthologous to human CAV1 (caveolin 1).

NR:

description
PREDICTED: caveolin-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277900 True 1926 lncRNA 0.45 2 12394424 12400830
TU277902 False 993 lncRNA 0.40 2 12398393 12400830

Neighbor

gene id symbol gene type direction distance location
LOC103029424 LOC108439350 coding downstream 107005 12284069 ~ 12287419 (-)
LOC103029000 LOC108439349 coding downstream 112849 12276314 ~ 12281575 (-)
LOC111195717 NA coding downstream 121439 12266801 ~ 12272985 (-)
LOC103029957 poc1b,LOC107561860 coding downstream 140393 12195908 ~ 12254031 (-)
dusp6 dusp6,LOC107574886 coding downstream 216289 12173364 ~ 12178135 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding upstream 7905 12408735 ~ 12415936 (-)
ptcd3 NA coding upstream 45896 12446726 ~ 12462753 (-)
sqstm1 sqstm1 coding upstream 121945 12522775 ~ 12528579 (-)
LOC103033266 NA coding upstream 492848 12893678 ~ 12901396 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding upstream 858473 13259303 ~ 13262496 (-)
G204840 NA non-coding downstream 19002 12375039 ~ 12375422 (-)
G204839 NA non-coding downstream 20323 12372552 ~ 12374101 (-)
G204848 NA non-coding downstream 44238 12349979 ~ 12350186 (-)
G204847 NA non-coding downstream 64200 12329967 ~ 12330224 (-)
G204837 NA non-coding downstream 88492 12305324 ~ 12305932 (-)
G204883 NA non-coding upstream 44439 12445269 ~ 12445726 (-)
G204874 polr1a,LOC103373600 non-coding upstream 77924 12478754 ~ 12485085 (-)
G204905 NA non-coding upstream 304409 12705239 ~ 12711529 (-)
LOC111195726 NA non-coding upstream 316783 12717613 ~ 12723744 (-)
G204920 NA non-coding upstream 390911 12791741 ~ 12796782 (-)
G204671 NA other downstream 810350 11583200 ~ 11584074 (-)
G204584 NA other downstream 1749737 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 2635357 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 4650852 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 5602433 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 1332883 13733713 ~ 13739921 (-)
G205375 NA other upstream 1343523 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 1501373 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 1541893 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 1573847 13974677 ~ 13978450 (-)

Expression


Co-expression Network