G204874 (polr1a,LOC103373600)


Basic Information

Item Value
gene id G204874
gene name polr1a,LOC103373600
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 12478754 ~ 12485085 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU277922
CCCCCCCCCCAAGCAAAGCAGTGTGCAGTTAGAAGCATTCATTATCACTGTAAAGGCTGCTTCAAATCGAAGAGTCCAGTCCCTCCTTTCACAACTTTTCCCACAACCAAGCAAGTCATCTGTTGTAGGGGAGAGCTGTTGGACTGAATGCCTAGCCGGTTAAGAGGTTTGTACACCCCTTCAAAGCACATGTAGTCAGCCACAAGAGACAGGTGTCGTGGATCTACCTCAATACCGTAAACAGCAAACACATCTTTGATCTCCTTCTCAATGACTCTCAGAGCCACTTCAATGCCATATGTGTTGGCCATGGCATGGATCTCATTCGAATACAAGCGATTTAAGTCTAGAATATGTCCGTGTTTGAACATCTCATGCATGTTGATGCCCTCTGTTTTCAGGAACAGTTCCTTGGCGCCGTCCTTAGTGGTCACCTCATTCAGTAAGCATCGTGTGATGCCTTTTGTTTCAATGATGACTGCATTTTGAGCTTGTGCTACCACCAATGATGTGAGGTCAAAGTGGACTTTGCTAACAGGCAGAGACAGCGTGATCTCACACCACAGGCCGTTTGTGTCGTCATATTTGTAGCCCTCAATGCTGTCGCTGATCTGTAGTACACTTGTAATCCTCATGGAATCCTGTGTACCATCTGCCTGCTCCTGGTTGTTGGAAGATTCTGAAGGTATGGGCGGTGAAATCCTGTTTGGCCTTTCTTCAAACTGTTCCTCAGATTCCTGAGATTTCTGCTCAGATCCTTCCATAACTTCCTCTTGTTCTTCATCACCATTTTCCTCGCCTTCATCACTCTCATAGTCAACCTCCtcctcttgtttttcttttctcttggCATCAGCAGCGTCTGCATCCCCTTCATCTGCTTCATCATCCACCACCCTGAGCTCCTCTCCATCCCCATCTCCATCATCCACCGCAGTCTCAGAGCCCCCAACATCCCGATCACTATCTTTGGTTGTGGCCTTGCGTGTGTCCACTGCATTAATAGAGGCCAGCTTGGCACTCAGTTTCTTGATGGCTTCAAGAAGTAACCGGAAAAACCTTTGTTCCATGAATGAAAGGATGCTTTGAGGAGACAATAACTTGTCCTCCTTGTAACGCTCTGGAGGCAGGAAGTGGAATGTGACCGTGAAGATTTGTTTGTTCTGGCTTATTTTCTTCGTCATGCGAAGTGTCTCGAGCACATCAACTTTATGCAACACCTCTGCCAAGCACACACGTGTGAGTTTTTTCCGGAGAATCTTGACCCGCTTCATGgctttttgttctttaaaaCTGGAATGCTCATCATAGGAGTCTTAATGTTGGAGCTAGCAATCAATAAAATTTCACGCAACCTGGGAATTCCCAGGGTGACGTTCATCTCCCCTCTGCCAGCAAAGTGAAATGTGTTTAGAGTCATCTGTGTGGAAGGCTCCCCAATGCTCTGCGCAGCCAGCAGCCCCACAGCCTCTCCAGGGTCACAGAGTGCCCTCTGCCACTTCAGTTGTAAGAGATTCCTCAAGcTCTCACAGTAACCACTTCCAGATGAAGAATCAAATTCATGCTTGATATTGAACTGACTGAGGTAGGTTTCAATCATCGAGCTGAACGTCTCAGACACAGAACCAAAGCAAATATCAGGCCGGAAAACAGCCAGACAGGGATCTGGGCAGTGGGATGTCTTCTTTAGATACTTTACTCGACTGCCATCATCCAATGTTTTCCATTTC

Function

symbol description
polr1a Predicted to enable DNA binding activity; nucleotidyltransferase activity; and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within embryonic viscerocranium morphogenesis; neural crest cell development; and rRNA transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin musculature; and segmental plate. Used to study acrofacial dysostosis Cincinnati type. Human ortholog(s) of this gene implicated in acrofacial dysostosis Cincinnati type. Orthologous to human POLR1A (RNA polymerase I subunit A).

NR:

description
PREDICTED: DNA-directed RNA polymerase I subunit RPA1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277922 True 1730 lncRNA 0.47 11 12478754 12485085

Neighbor

gene id symbol gene type direction distance location
ptcd3 NA coding downstream 16001 12446726 ~ 12462753 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding downstream 62818 12408735 ~ 12415936 (-)
LOC103029424 LOC108439350 coding downstream 191335 12284069 ~ 12287419 (-)
LOC103029000 LOC108439349 coding downstream 197179 12276314 ~ 12281575 (-)
LOC111195717 NA coding downstream 205769 12266801 ~ 12272985 (-)
sqstm1 sqstm1 coding upstream 37690 12522775 ~ 12528579 (-)
LOC103033266 NA coding upstream 408593 12893678 ~ 12901396 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding upstream 774218 13259303 ~ 13262496 (-)
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding upstream 819331 13304416 ~ 13309323 (-)
LOC103034080 NA coding upstream 856736 13341821 ~ 13347405 (-)
G204883 NA non-coding downstream 33028 12445269 ~ 12445726 (-)
G204861 cav1,LOC107574842,LOC107679630,LOC108269231,LOC107716666,LOC107574005 non-coding downstream 77924 12394424 ~ 12400830 (-)
G204840 NA non-coding downstream 103332 12375039 ~ 12375422 (-)
G204839 NA non-coding downstream 104653 12372552 ~ 12374101 (-)
G204848 NA non-coding downstream 128568 12349979 ~ 12350186 (-)
G204905 NA non-coding upstream 220154 12705239 ~ 12711529 (-)
LOC111195726 NA non-coding upstream 232528 12717613 ~ 12723744 (-)
G204920 NA non-coding upstream 306656 12791741 ~ 12796782 (-)
G204929 NA non-coding upstream 320811 12805896 ~ 12812628 (-)
G204933 NA non-coding upstream 338514 12823599 ~ 12826019 (-)
G204671 NA other downstream 894680 11583200 ~ 11584074 (-)
G204584 NA other downstream 1834067 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 2719687 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 4735182 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 5686763 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 1248628 13733713 ~ 13739921 (-)
G205375 NA other upstream 1259268 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 1417118 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 1457638 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 1489592 13974677 ~ 13978450 (-)

Expression


Co-expression Network