G204920


Basic Information

Item Value
gene id G204920
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 12791741 ~ 12796782 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU277992
TTAAATATACAGACTCAGTCATTGATCACATTGATATTCTCACGCTCACTACTCTACCAAGGATAATCAGCTTTCTTCATATTTGCATCGATCCAGGCCATCCATTGCAAAAACATTACTTGTGAgatggtaaagaaaaaaacaaatattgggACAAATCTCAGATGCAACAGGGGTGACAAGATAGAGGACAGTGAAGATTGATGCTAGTTAGCGAGAGATCCAGCGAGCTTTTAGTGTGGCAGCAGTGCAGCAtgcatgtgtgaatgtgtattttCGACTCAGTTACTATAAAAAGTGCCAACTTTTTTCAAACTTGGGGCAGAGCTCAAGTCACAGCGCCTTCCTCCGCCATGCCGGCTGGAACAGTAGTGGTGGCGGAGGTAGGTTAGCCTCACTAAAAGCAAAAATTAGTAACTAAGGCAAGCTGGAGTGAATGGACAGGTTTgctgcctttgttttctccagATTGGGGTTTGTCCCCATTAGTGCCATTTCATATGTCTCTGGGGTAAAAATGTTTTGGGCAGAGTGAAATAGTGGAAGAAATCTGAAAGCTTATTTTACAATCTATGGAAAAAGGTCTTTAACAATTATTAGAAAAGGTCCCAAAGTCATTGAAGTACATTGAAGGACATGGTTGAAGtgtttaaatacacacatacacacaaaaaatccaATAGGGTTTCAGCACTGTAGGAAGTGCTTGGCCCCCTAAAACGCTGCTattgccgctgctgctgctgggacAGGATATTACATCATGTAACGTGTGAGTGGAGCCAAGTCATTCGCCAATGGAGCGTCAGAAGACTGACTTAGTGCACCAATGGAAAGATAACAGGCTGAGCAGAAATACACCGTGAGTCATGCCAGGCAAGGACGCAAGCCCTGTCGTATCTGAGGTTTTAACCCTTGGTGATCAGCATGGAACCGTTCTCGTCATTCTCTCATTCGCTAACCTAAACATCAAACTTAACTCAATAAGAATGTTGTGTTGTGTCTGCCCCCCTGTTATGAACTATGAACAGTTTACTGCTATGCAAGTTCAAAACCTGAAAACAACCAAACAAAAGTAATACATGTAAGAAAATCCATGATTTAGTAAAAAGAAAGTTCtggtgacataaaaaaaaaatcataaccaTATATATtagtaacaacaacaaaaaaaagaaactcagtACATTCACACAAATAAAATCAGCCAAAAATGTGTCTCCACATCCTACGAAATAAGGCAGCTTGCTAGAACCTAAAGCCTAACTGGCATTCTCCACAAACCTAACTGGGATTCTGCAGCAAAAACACCCAAATTCTGAAACGCACAATTTACGGCGCAACCAGGGTGTCTTTAGGATCCACTATGGTCTGCTCTgactaaatgacaaaaaaaaaaaataataataataaaaaaaaaaaaaaagatctctgTGGAATGAATGCCAAGGTAACGTGATCTCTCATTATGTCAATAATCATCAGGCAGACAGGTCAACAACTGAACCAACTGAACTACTGACCTGACCGTATCTGATCTACCTTCTAAAAATGGGGAATCTCTGGACTACAACACCTCTCCACTCTCGTACATGGATGAATCAGCTTCTGCTTTAAACCCTGCCATGCAGCACAGGGCTGTAGTGTTGCCACATCTGACGATTGAATGAATACTGTCCCGAGTAGCAATGTGCCGACTGGAGGCTGGAGGGCTTGTGTTGTTTAGGTTGGGAAAATGagagaggctttttttttttttcattagcatGAGCACAGTTAAGGAATGGTAAAagtttctttcttcctttttagtaaagcaaacaaagaaaaacaaagaaaaacaaaaagggtTTCTACTCTATACATCATAGTTATCTTCAGCATCACCTTACTCCTCAGCCTGGTCCAAGGCAGTGACTCGTGTTGGATTTTTGATTTTCTTGCTTTCTTCCTGTCGATCGCGCCACAGACTTTGTGTTCTCTCGGTTTGTCATCGCTTTAGCAAGGATGGAGCAGAAGACCAGAGAAGATGGGAATGAGGGCGAAGAGGAAAGAATGAGGGAGGGAAAAAAGGAGGTCCCATTGAGGAAAGGTAAGGGGGAGGGACACAGGACACAAAGGACAGGGGCTGCAGTTGTTGAACAGATCCaggaagcaaaaacaaaaatcagaagAAAGTCATTCAGTCCTTTCTAGCTTTCGCTTTGCTTCTGGGGGACCTTCTCAAAACTTCATCTTCTTGTTCTCATCCGAtttatcttcctcttcttcctgtttctctacttctgcttcttcttccgCATCTCCTTCTGCAGGACTGTCCTCTGCATTATCCTTCTCCTCTGACTCTTCAgctttttcctcctcctcctcctcttccttctcTTCCTCTGCATCATCCTTCACATCAGGCTGTGGCTCATCAGTCTTCTTGTATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277992 True 2439 lncRNA 0.42 3 12791741 12796782

Neighbor

gene id symbol gene type direction distance location
sqstm1 sqstm1 coding downstream 263162 12522775 ~ 12528579 (-)
ptcd3 NA coding downstream 328988 12446726 ~ 12462753 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding downstream 375805 12408735 ~ 12415936 (-)
LOC103029424 LOC108439350 coding downstream 504322 12284069 ~ 12287419 (-)
LOC103029000 LOC108439349 coding downstream 510166 12276314 ~ 12281575 (-)
LOC103033266 NA coding upstream 96896 12893678 ~ 12901396 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding upstream 462521 13259303 ~ 13262496 (-)
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding upstream 507634 13304416 ~ 13309323 (-)
LOC103034080 NA coding upstream 545039 13341821 ~ 13347405 (-)
LOC111195721 NA coding upstream 553655 13350437 ~ 13356360 (-)
LOC111195726 NA non-coding downstream 67997 12717613 ~ 12723744 (-)
G204905 NA non-coding downstream 80212 12705239 ~ 12711529 (-)
G204874 polr1a,LOC103373600 non-coding downstream 306656 12478754 ~ 12485085 (-)
G204883 NA non-coding downstream 346015 12445269 ~ 12445726 (-)
G204861 cav1,LOC107574842,LOC107679630,LOC108269231,LOC107716666,LOC107574005 non-coding downstream 390911 12394424 ~ 12400830 (-)
G204929 NA non-coding upstream 9114 12805896 ~ 12812628 (-)
G204933 NA non-coding upstream 26817 12823599 ~ 12826019 (-)
G204946 NA non-coding upstream 108412 12905194 ~ 12906012 (-)
G204952 NA non-coding upstream 209696 13006478 ~ 13006707 (-)
LOC111195725 NA non-coding upstream 209964 13006746 ~ 13013000 (-)
G204671 NA other downstream 1207667 11583200 ~ 11584074 (-)
G204584 NA other downstream 2147054 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3032674 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5048169 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 5999750 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 936931 13733713 ~ 13739921 (-)
G205375 NA other upstream 947571 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 1105421 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 1145941 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 1177895 13974677 ~ 13978450 (-)

Expression


Co-expression Network