G204952


Basic Information

Item Value
gene id G204952
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13006478 ~ 13006707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278033
taactttagtgcggttcgattgatcaggtgtaaaaacagtaatcgcactcgggtgcggatcaaaagaaccggaccgagaccagctagaggaggtggtctcggtccggtaccaaacgaactctggagctgttcgcttgtggtgagaacgtgatccggtctcgtttggatccagctattaaatataagccatttatttgagctaaactgctgataaagcaagcacagtttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278033 True 230 lncRNA 0.47 1 13006478 13006707

Neighbor

gene id symbol gene type direction distance location
LOC103033266 NA coding downstream 105082 12893678 ~ 12901396 (-)
sqstm1 sqstm1 coding downstream 477899 12522775 ~ 12528579 (-)
ptcd3 NA coding downstream 543725 12446726 ~ 12462753 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding downstream 590542 12408735 ~ 12415936 (-)
LOC103029424 LOC108439350 coding downstream 719059 12284069 ~ 12287419 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding upstream 252596 13259303 ~ 13262496 (-)
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding upstream 297709 13304416 ~ 13309323 (-)
LOC103034080 NA coding upstream 335114 13341821 ~ 13347405 (-)
LOC111195721 NA coding upstream 343730 13350437 ~ 13356360 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding upstream 376105 13382812 ~ 13438173 (-)
G204946 NA non-coding downstream 100466 12905194 ~ 12906012 (-)
G204933 NA non-coding downstream 180459 12823599 ~ 12826019 (-)
G204929 NA non-coding downstream 193850 12805896 ~ 12812628 (-)
G204920 NA non-coding downstream 209696 12791741 ~ 12796782 (-)
LOC111195726 NA non-coding downstream 282734 12717613 ~ 12723744 (-)
LOC111195725 NA non-coding upstream 39 13006746 ~ 13013000 (-)
LOC111195722 NA non-coding upstream 17561 13024268 ~ 13033128 (-)
LOC111195727 NA non-coding upstream 281145 13287852 ~ 13298774 (-)
LOC111195723 NA non-coding upstream 313605 13320312 ~ 13322121 (-)
G205327 NA non-coding upstream 574537 13581244 ~ 13683903 (-)
G204671 NA other downstream 1422404 11583200 ~ 11584074 (-)
G204584 NA other downstream 2361791 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3247411 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5262906 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6214487 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 727006 13733713 ~ 13739921 (-)
G205375 NA other upstream 737646 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 895496 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 936016 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 967970 13974677 ~ 13978450 (-)

Expression


Co-expression Network