LOC111195722


Basic Information

Item Value
gene id LOC111195722
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13024268 ~ 13033128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278060
TTTACCGTCGTCACTCTGGACGTATTTAGTCATTTCTGACACCATCTCAGCTGCATTCTAAATAAGGATGTTTCTTGCCTTCCACTCTGAATGCTGGGATGGGCTAAAGCACCCCCTGCAACCCAGAATGATTTTTGATGGGTCAGAAGATGAACATGCTGGAACCTTACTGGAAGGACAGACACCTCTTAAAGATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAATTTGTGC
>TU278062
TTTACCGTCGTCACTCTGGACGTATTTAGTCATTTCTGACACCATCTCAGCTGCATTCTAAATAAGGATGTTTCTTGCCTTCCACTCTGAATGCTGGGATGGGCTAAAGCACCCCCTGCAACCCAGAATGATTTTTGATGGGTCAGAAGATGAGTGAACATGCTGGAACCTTACTGGAAGGACAGACACCTCTTAAAGATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAATTTGTGC
>TU278065
GCTTCAATATAAAGCTATTTATCAAATGGGTGCAGCCAAAAAAGGCTTTCTGATGAGATTGATgcagaatatactgtattaaaacagtTCTGAAACTTTTAAATTTAACATACTTTGACTTGTTTCACAtctgtgatttatttttagACATGCTGGAACCTTACTGGAAGGACAGACACCTCTTAAAGATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAATTTGTGC
>TU278066
AGCCCACAGGGGagcgtcggtggtgaaaattaaaactcagagaaaaacgattttcataaaaacacatcgtccttaactgtaaattcaaattaatcgataaaatcaaTTAATCGCACAGCTCTAGAACAAACATATTGGTTGGTTATGCAAAGAATATgtttcactgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtcacccTGTTCAGGATGTTTCTTGCCTTCCACTCTGAATGCTGGGATGGGCTAAAGCACCCCCTGCAACCCAGAATGATTTTTGATGGGTCAGAAGATGAACATGCTGGAACCTTACTGGAAGGACAGACACCTCTTAAAGATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAATTTGTGC
>XR_002651753.1
AGTTGGCTTGCCATATTTACCGTCGTCACTCTGGACGTATTTAGTCATTTCTGACACCATCTCAGCTGCATTCTAAATAAGGATGTTTCTTGCCTTCCACTCTGAATGCTGGGATGGGCTAAAGCACCCCCTGCAACCCAGAATGATTTTTGATGGGTCAGAAGATGAACATGCTGGAACCTTACTGGAAGGACAGACACCTCTTAAAGATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAAT
>XR_002651754.1
AGTTGGCTTGCCATATTTACCGTCGTCACTCTGGACGTATTTAGTCATTTCTGACACCATCTCAGCTGCATTCTAAATAAGGATGTTTCTTGCCTTCCACTCTGAATGCTGGGATGGGCTAAAGCACCCCCTGCAACCCAGAATGATTTTTGATGGGTCAGAAGATGAGTGAACATGCTGGAACCTTACTGGAAGGACAGACACCTCTTAAAGATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAAT
>XR_002651755.1
AGTTGGCTTGCCATATTTACCGTCGTCACTCTGGACGTATTTAGTCATTTCTGACACCATCTCAGCTGCATTCTAAATAAGGATGTTTCTTGCCTTCCACTCTGAATGCTGGGATGGGCTAAAGCACCCCCTGCAACCCAGAATGATTTTTGATGGGTCAGAAGATGAATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAAT
>XR_002651756.1
AGTTGGCTTGCCATATTTACCGTCGTCACTCTGGACGTATTTAGTCATTTCTGACACCATCTCAGCTGCATTCTAAATAAGGATGTTTCTTGCCTTCCACTCTGAATGCTGGGATGGGCTAAAGCACCCCCTGCAACCCAGAATGATTTTTGATGGGTCAGAAGATGAGTGAATGATGCAGTGACCACTGATTTAATGATTGCTAACAAGATCCTTGAGTGGAACTATCATGTCTTCAAAGACTGGATTCTTGGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278060 False 285 lncRNA 0.43 5 13024268 13033113
TU278062 False 289 lncRNA 0.43 5 13024268 13033113
TU278065 False 279 lncRNA 0.35 2 13024268 13026673
TU278066 True 438 lncRNA 0.41 3 13024268 13030391
XR_002651753.1 False 294 lncRNA 0.43 5 13024274 13033128
XR_002651754.1 False 298 lncRNA 0.43 5 13024274 13033128
XR_002651755.1 False 253 lncRNA 0.43 4 13024274 13033128
XR_002651756.1 False 257 lncRNA 0.43 4 13024274 13033128

Neighbor

gene id symbol gene type direction distance location
LOC103033266 NA coding downstream 122872 12893678 ~ 12901396 (-)
sqstm1 sqstm1 coding downstream 495689 12522775 ~ 12528579 (-)
ptcd3 NA coding downstream 561515 12446726 ~ 12462753 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding downstream 608332 12408735 ~ 12415936 (-)
LOC103029424 LOC108439350 coding downstream 736849 12284069 ~ 12287419 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding upstream 226175 13259303 ~ 13262496 (-)
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding upstream 271288 13304416 ~ 13309323 (-)
LOC103034080 NA coding upstream 308693 13341821 ~ 13347405 (-)
LOC111195721 NA coding upstream 317309 13350437 ~ 13356360 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding upstream 349684 13382812 ~ 13438173 (-)
LOC111195725 NA non-coding downstream 11268 13006746 ~ 13013000 (-)
G204952 NA non-coding downstream 17561 13006478 ~ 13006707 (-)
G204946 NA non-coding downstream 118256 12905194 ~ 12906012 (-)
G204933 NA non-coding downstream 198249 12823599 ~ 12826019 (-)
G204929 NA non-coding downstream 211640 12805896 ~ 12812628 (-)
LOC111195727 NA non-coding upstream 254724 13287852 ~ 13298774 (-)
LOC111195723 NA non-coding upstream 287184 13320312 ~ 13322121 (-)
G205327 NA non-coding upstream 548116 13581244 ~ 13683903 (-)
G205332 NA non-coding upstream 562067 13595195 ~ 13598025 (-)
G205343 NA non-coding upstream 601596 13634724 ~ 13650827 (-)
G204671 NA other downstream 1440194 11583200 ~ 11584074 (-)
G204584 NA other downstream 2379581 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3265201 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5280696 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6232277 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 700585 13733713 ~ 13739921 (-)
G205375 NA other upstream 711225 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 869075 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 909595 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 941549 13974677 ~ 13978450 (-)

Expression


Co-expression Network