LOC111195723


Basic Information

Item Value
gene id LOC111195723
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13320312 ~ 13322121 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278166
agagagagagagttgcgtCAACTCCGTTCACTCCAATGGACCAGTTTTTTACAGCAATGGCGGACCGTGGAGCCTGTCAATAGTTCCCGGAAGTTAGCAGCAAATACTATCAGCACAGTGAAGCTGGAGCAGGATACACCATGTGTGGTCCACTTTTACAGGGTTCATTCTTCCGAACTACACAAGTAAACCCCATTTTATGTAATCTGTGCTGAttctttggtttatttacatgtgcaatgtactattttcctttagttgatttacatgtgttctgtactttgtttttctgtatgtagCCTCTCTATATTCTGATATCAGTCTTTAAAGTTATATATCATCTCatg
>XR_002651757.1
gtttcgctcagatcagagccatagagagagagagttgcgtCAACTCCGTTCACTCCAATGGACCAGTTTTTTACAGCAATGGCGGACCGTGGAGCCTGTCAATAGTTCCCGGAAGTTAGCAGCAAATACTATCAGCACAGTGAAGCTGGAGCAGGATACACCATGTGTGGTCCACTTTTACAGGGTTCATTCTTCCGAACTACACAAGTAAACCCCATTTTATGTAATCTGTGCTGAttctttggtttatttacatgtgcaatgtactattttcctttagttgatttacatgtgttctgtactttgtttttctgtatgtagCCTCTCTATATTCTGATATCAGTCTTTAAAGTTATATATCATCTCatgtttgttgtaaaaataataaagctgttGCAAATAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU278166 False 347 lncRNA 0.40 2 13320346 13322099
XR_002651757.1 True 403 lncRNA 0.39 2 13320312 13322121

Neighbor

gene id symbol gene type direction distance location
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding downstream 10989 13304416 ~ 13309323 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding downstream 57816 13259303 ~ 13262496 (-)
LOC103033266 NA coding downstream 418916 12893678 ~ 12901396 (-)
sqstm1 sqstm1 coding downstream 791733 12522775 ~ 12528579 (-)
ptcd3 NA coding downstream 857559 12446726 ~ 12462753 (-)
LOC103034080 NA coding upstream 19700 13341821 ~ 13347405 (-)
LOC111195721 NA coding upstream 28316 13350437 ~ 13356360 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding upstream 60691 13382812 ~ 13438173 (-)
fgfrl1 fgfrl1,LOC107730574 coding upstream 214368 13536489 ~ 13547597 (-)
LOC103037875 NA coding upstream 404544 13726665 ~ 13733660 (-)
LOC111195727 NA non-coding downstream 21538 13287852 ~ 13298774 (-)
LOC111195722 NA non-coding downstream 287184 13024268 ~ 13033128 (-)
LOC111195725 NA non-coding downstream 307312 13006746 ~ 13013000 (-)
G204952 NA non-coding downstream 313605 13006478 ~ 13006707 (-)
G204946 NA non-coding downstream 414300 12905194 ~ 12906012 (-)
G205327 NA non-coding upstream 259123 13581244 ~ 13683903 (-)
G205332 NA non-coding upstream 273074 13595195 ~ 13598025 (-)
G205343 NA non-coding upstream 312603 13634724 ~ 13650827 (-)
G205345 NA non-coding upstream 316453 13638574 ~ 13643510 (-)
G205361 hdac3,LOC103471067 non-coding upstream 363280 13685401 ~ 13687836 (-)
G204671 NA other downstream 1736238 11583200 ~ 11584074 (-)
G204584 NA other downstream 2675625 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3561245 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5576740 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6528321 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 411592 13733713 ~ 13739921 (-)
G205375 NA other upstream 422232 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 580082 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 620602 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 652556 13974677 ~ 13978450 (-)

Expression


Co-expression Network