G205327


Basic Information

Item Value
gene id G205327
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13581244 ~ 13683903 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278573
tctcctgtttccaccagaactgtccgtcaccacaatcaattattgtgctctaaaaccaggtgtttcagtttcattctccaacacctgtatatatcagtttaaacagaCAGTACGGACACATCTCCAGAGCCTGTTCAGTAgtacagtagtatagtagtatagtaaagACGGCAGAGTATAATCACCCGCTGTTCACTTCAGCTCAAaaccactgattttttttatgtttaaacatataattattattaatatttctacatttaaacCAGTCGCACATAAAAGCAACATAAATAAGCACTTGATTTTTCTTAATTCATTAATCTTTACATAAAATTCAAACTTTACACAGTCATTCTAAACTctaacacacataaaaacactttCCAGAGCCAGAGAGAGCCGAGAAACGATCAGAAATTACACAAAACTATAATTTCAGCTAAAAGTAGCTCAAATATCACTGCAGCGGGAGAAGAGTCTCAGTAGAGCAGCGGGTTATTGATCAGTATTGATCAGAGGGCTGTGGGTACACATGTTTGTctgagtgtatagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacccgGAGTGATGAGAGGTCGGTGAGCTCCAGGCTCCGCGCGCTGCAGTCCCGCGACATCATCTCCCCTCTCTCCCATCAGCCGCCCAGTATAACCCAGTAtaacacacacagctccagCCCAGCAGAagttgtgtaaagttgtgtaaagttgtgtagagttgtgtagagttaatCCGAGTTGCTGCAGCGCGAGTCTGAGTTTATCTCCATACTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278573 True 805 lncRNA 0.41 2 13581244 13683903

Neighbor

gene id symbol gene type direction distance location
fgfrl1 fgfrl1,LOC107730574 coding downstream 33647 13536489 ~ 13547597 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding downstream 143071 13382812 ~ 13438173 (-)
LOC111195721 NA coding downstream 224884 13350437 ~ 13356360 (-)
LOC103034080 NA coding downstream 233839 13341821 ~ 13347405 (-)
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding downstream 271921 13304416 ~ 13309323 (-)
LOC103037875 NA coding upstream 42762 13726665 ~ 13733660 (-)
atoh8 atoh8,LOC107746166,LOC107688589,LOC107591885 coding upstream 67510 13751413 ~ 13764223 (-)
LOC103037229 NA coding upstream 81613 13765516 ~ 13767091 (-)
LOC111195730 NA coding upstream 90433 13774336 ~ 13777596 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding upstream 96242 13780145 ~ 13798633 (-)
LOC111195723 NA non-coding downstream 259123 13320312 ~ 13322121 (-)
LOC111195727 NA non-coding downstream 282470 13287852 ~ 13298774 (-)
LOC111195722 NA non-coding downstream 548116 13024268 ~ 13033128 (-)
LOC111195725 NA non-coding downstream 568244 13006746 ~ 13013000 (-)
G204952 NA non-coding downstream 574537 13006478 ~ 13006707 (-)
G205361 hdac3,LOC103471067 non-coding upstream 1498 13685401 ~ 13687836 (-)
G205363 NA non-coding upstream 58717 13742620 ~ 13743347 (-)
G205378 NA non-coding upstream 84836 13768739 ~ 13779505 (-)
G205386 NA non-coding upstream 142609 13826512 ~ 13827387 (-)
G205387 NA non-coding upstream 149664 13833567 ~ 13833945 (-)
G204671 NA other downstream 1997170 11583200 ~ 11584074 (-)
G204584 NA other downstream 2936557 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3822177 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5837672 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6789253 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 49810 13733713 ~ 13739921 (-)
G205375 NA other upstream 60450 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 218300 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 258820 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 290774 13974677 ~ 13978450 (-)

Expression


Co-expression Network