LOC111195729


Basic Information

Item Value
gene id LOC111195729
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13733713 ~ 13739921 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278618
taattaattacaacaaCAGCAGCGGCAGCAACAGCAAAAATAGCGACAAGAAGAAGCAAgATAATATTTATCACTTACCGAAATCACACTTCACACTCCAGCTCAGTAGGGGGCGGTGCACCTGTATTTGGGTTTGCCATCCGCCATTAGAATTGATCTCAGGTGAGCTGATTAGTGAGGAGAGTACCTGGCGTTAATTAATTACGAGTAATTAATTACAACAACAGCAGCGGCAGCAACAGCAAAAATAGCGACAAGAAGAAGCAAGTGTTTTCActccagccccgccccctcacCTCCAGAGCCATGGGCCCTACTGACCTGTACAAGAGGAGGAGCTTTGAGTGCAGCCAGTCCTTTAGATCCTGTGGTTCAGTCCAGAGCGTCCAGCCCCACAACATCTCCCACCTACTGAGACCCCGACCCACAGAGCTCCACCACAACACCGGCCACAAACTGCGGGCACTGCACTCTGGCATCACCCTGGCATCACCCTGGCATCAGGccatttactgctctttaccCTCAGCTCAGTGTTACAGGGGTAAGAGTGTTACAGCGGTAAATCGGTACAGCAGTAAtttgttacagtgttacagttGTAGATCGGGTGTTATAGAGGTAGAGCggtacagtgttacagtgttacaACGGTAAATCATTACAGCTAGTAGAGTGTTACTGTGTTACAGTGGTAGAATGGGTCTTACAGAGTTAAATTGTTACTGCTGTAAATTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAAATTGTTACTGCTAGTAGAGTGTTACTGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAAATTGTTACTGCTAGTAGAGTGTTACTGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGGTACAGTGGTAGATCGGGTGGTACAGTGGTAAATTGTTACTGCTAGTAGAGTGTTACTGTGTTACAGTGGTAAATTGTTACAGTGGTAGAATGGGTCTTACAGAGTTAAATTGTTACTGCTGTAAATTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGGTACAGTGGTAAATTGTTACTGCTGTAAATTGTTACAGCTAGTAGAGTGTTACTGTGTTACAGTGGTAAATTGTTACAGTGGTTAGATCGGgtgttacagtgttacagtggTAGATCGGGTGGTACAGTGGTAGATCGGGTGGTACAGTGGTAGATCGGGTGGTACAGTGGTAAATTGTTACAGCTAGTAGAGTGTTACTGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAAATTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGGTACAGTGGTAGATCGGGTGGTACAGTGGTAGATCGGGTCCCAGCGGTAAATTGTTACAGCTAGTAGAGTGTTACTGTGTTACAGTGGTA
>XR_002651765.1
TTTGCCATCCGCCATTAGAATTGATCTCAGGTGAGCTGATTAGTGAGGAGAGTACCTGGCGTTAATTAATTACGAGTAATTAATTACAACAACAGCAGCGGCAGCAACAGCAAAAATAGCGACAAGAAGAAGCAAGTGTTTTCActccagccccgccccctcacCTCCAGAGCCATGGGCCCTACTGACCTGTACAAGAGGAGGAGCTTTGAGTGCAGCCAGTCCTTTAGATCCTGTGGTTCAGTCCAGAGCGTCCAGCCCCACAACATCTCCCACCTACTGAGACCCCGACCCACAGAGCTCCACCACAACACCGGCCACAAACTGCGGGCACTGCACTCTGGCATCACCCTGGCATCACCCTGGCATCAGGccatttactgctctttaccCTCAGCTCAGTGTTACAGGGGTAAGAGTGTTACAGCGGTAAATCGGTACAGCAGTAAtttgttacagtgttacagttGTAGATCGGGTGTTATAGAGGTAGAGCggtacagtgttacagtgttacaACGGTAAATCATTACAGCTAGTAGAGTGTTACTGTGTTACAGTGGTAGAATGGGTCTTACAGAGTTAAATTGTTACTGCTGTAAATTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAAATTGTTACTGCTAGTAGAGTGTTACTGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAAATTGTTACTGCTAGTAGAGTGTTACTGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGTTACAGTGGTAGATCGGGTGGTACAGTGGTAGATCGGGTGGTACAGTGGTAAATTGTTACTGCTAGTAGAGTGTTACTGTGTTACAGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278618 True 1558 TUCP 0.46 4 13733713 13739921
XR_002651765.1 False 939 lncRNA 0.47 3 13734200 13739028

Neighbor

gene id symbol gene type direction distance location
LOC103037875 NA coding downstream 53 13726665 ~ 13733660 (-)
fgfrl1 fgfrl1,LOC107730574 coding downstream 186116 13536489 ~ 13547597 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding downstream 295540 13382812 ~ 13438173 (-)
LOC111195721 NA coding downstream 377353 13350437 ~ 13356360 (-)
LOC103034080 NA coding downstream 386308 13341821 ~ 13347405 (-)
atoh8 atoh8,LOC107746166,LOC107688589,LOC107591885 coding upstream 11492 13751413 ~ 13764223 (-)
LOC103037229 NA coding upstream 25595 13765516 ~ 13767091 (-)
LOC111195730 NA coding upstream 34415 13774336 ~ 13777596 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding upstream 40224 13780145 ~ 13798633 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding upstream 119300 13859221 ~ 13887086 (-)
G205361 hdac3,LOC103471067 non-coding downstream 45877 13685401 ~ 13687836 (-)
G205327 NA non-coding downstream 49810 13581244 ~ 13683903 (-)
G205343 NA non-coding downstream 82886 13634724 ~ 13650827 (-)
G205345 NA non-coding downstream 90203 13638574 ~ 13643510 (-)
G205332 NA non-coding downstream 135688 13595195 ~ 13598025 (-)
G205363 NA non-coding upstream 2699 13742620 ~ 13743347 (-)
G205378 NA non-coding upstream 28818 13768739 ~ 13779505 (-)
G205386 NA non-coding upstream 86591 13826512 ~ 13827387 (-)
G205387 NA non-coding upstream 93646 13833567 ~ 13833945 (-)
G205423 gsr,LOC107680979 non-coding upstream 245909 13985830 ~ 13991653 (-)
G204671 NA other downstream 2149639 11583200 ~ 11584074 (-)
G204584 NA other downstream 3089026 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3974646 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5990141 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6941722 6614604 ~ 6791991 (-)
G205375 NA other upstream 4432 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 162282 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 202802 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 234756 13974677 ~ 13978450 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other upstream 1668023 15407944 ~ 15567635 (-)

Expression


Co-expression Network