CI01000009_12152712_12167719 (OBSL1B)


Basic Information

Item Value
gene id CI01000009_12152712_12167719
gene name OBSL1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12152465 ~ 12167719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_12152712_12167719.mRNA
AAGATTGAGGGAAAGGAGCATTTCATCTGTGAAGAGGAAGGGGCATTCAGATCTCTGATTGTTCTGAGTGCTGAGTTGATGGACTCAGGAGAGTACATTTGTGATGCACAAGATGATAAAGTTGTCTTCACTGTTACTGTACAAGAGGCTCCAGTGTCCATTGTTGGAAATTCAGAGAAGCCAGAACATCACATTTTAATGACAGGAGATGAGCTTATCCTGGAATGTGAGGTATCACGAGCAAATGCTATAGTCCAGTGGTACTGCAATGGAAGTTTACTACAAGAGGATTCACGCACACACATTGAAAGCAGAGACACAATGAGGAAGCTTGTGATATCAAGACTTCAGACATCTGACTCTGGAGAGTATCTCTGTGATGCCATTGATGACAAAATGATAACTAGGCTAACGGTTCAAGAACCACCATTCAAATTCATCAAAAAAGAAGAAAGAACAAATATTTCAGCCTATGAAGAAGACAGTGTGACACTACGTGCCACTGTTAACAGGGTCAATGCCCCAGTGAAATGGCAGAGAGGTCATGATCCAATCCGAGGAGATCGTTTCCACACAACAAGTGATGGTAACACCCACTACCTTACTATTAACCCACTTAAGAGATGTGATACTGGAGAGTACACATGTCACGTGGGATCCGACGAGATGCACTTCAGTGTCCAAGTCAAAGCAATGAAAGTGAAATTCTCCAAACCACTGGAAAACATAGTGGGACTCAAAGGTAGTGATGTGGTTTTAAAATGTGAACTGTACAAGTCAAAAGGAGATGTTCAGTGGCTTAAGGACAGCCAAGAGATTGTGCCAAACAGACATTTTACAATCAGAGCTGATGGTCGAGTGAGAAGCCTGACAATATATAACATCACAGAAGATGATGCAGGAGAATATGCTTGTGAATCCAAAGATGAAAGGACATCAGCTGCTGTAGTGGTCAATATTCCTCGCATTGTGGAGTTTATTGCGGAGCTACACAACATAACTGTCATGGAAGGAGAAGATGCAACATTTAAGTGTGTAGTGTCTCCAGAGGATGCAAAGTTGGCCTGGTTTAGAAATGGCCAGCCAATTTCATCAAATGATAAGTTCAACATCTCAAGTAATGGATTATGCCATATGTTGCATATCAACAAATGCCAAGTCTCAGATAGCTGCAAGTTGACTGCTAAGGCTGAAGGTGTGATTTCCAGAGCTATCCTTCAGGTCCAAGAGCTTCATAAAGTGTTAAAAACTACTACGGGGAAAGATTTGATCAATTACCCTTATCTGTATTCAGAGGCGCAGGTACTTTTCACAAAGAGCATGGACCCGGTGGTTGCAGAGGAGTTTGGTGAGGCAACGCTTGAGGTGGAGGTCAGCCTTGAGACTGCGGAGGTGCAGTGGATGAGACAAGGAGTGGTTATACATCCAGGGTCCAAATTCACCCTGAAGCAGAGTGGCAAAAAACGTTCTCTCACAATCCACAAACTCACCCTTTCAGACCGAGGCACCTACAGCTGTGAAACGCTCCATGACCGCACGCAAGCCAAGCTCAGTGTGGAACCACGGAAAATCAAGATTCGGAAAGGTCTAACTGAGATCCAGACTTACGAACGAGAGACAGCTTCTTTTGAAGTGGAGCTGTCACATAGCAATGTGGAGGGTGTATGGCAGAAGGATGGGCATGCTCTCAAAAACAACAACCGTTTGCGTATGACTGCAAAAGGACGGGTACACAGCCTTACCATCTCCAGCCTGACCTTGGATGACACTGGCACCTACATATTCTCTGTTGAGAATGTCAGATCATTAGCAAGATTGAATGTTAAAGAAATCCCAGTATCAATCTTGAAAAAGCTTGAGGATATCAGGCAACCAGAGGGATCTGGTATAACCCTTGAATGTGAGCTGTCACGCCACAACGTAGACGTAAAGTGGACAAAGAATGAAGTTCAGCTTAAACCAGGAAAAAATCATCGCATTTACTCTATGGGAAGAAAGTGCTTTCTACATATCCTGAAGTGTGAGCTGGGAGACTCTGGTTTATATGTGTGTGATGCTGGGGAAGCTAAAACATCCTGTTCAGTGGAAATCTATGAGAGGGAACTTGAGATACTACAAAGCTTAGAGGATCTGGATATTCAAGAAGATCAAAATGCAGTGTTCATGTGTGAAGTGTCACTGGATGACGTGCCCGGAGAATGGTTTAAGAATAAAGAGAAGATAAAACCAACCAGCACCATTAAGATCCGCCAGGAAGGGACTAAGCACTTCCTCCTCATATGCAACGTTAAAGGAGACGACTCTGGAGAGATCAAGTTTGTAGCCAAGAATGTTGAGTCTACAGCTTACCTTGAGGTGGAAGCACTACCAGCAAACATTGCGAAACCACTTCAGGATAAAACAGCTCTAGAAAAAACCCGTGTCATACTGGACTGCACTGTGACCAATCCTCGTTGCAGCATTCGCTGGTATAAGGGACCTAATGTCATCCTGCCCTCAGAGCGCTTTGAGATCTGCAGTGAAGGGTGCTATCGAAAACTTGTGATTCAGCAGGTGTTGCTAGAGGATGAGGGCACCTATAGTGTTCAAGTTGGGAACTACACATCCTCAGCAAAACTAACTGTTGAAGCTCAGTCAGTCGTGATGGTGCGAGAGCTGCAGGATGTGGATGTAACTGCTCCTGCAGATGCATGCTTTGAATGTGAAGTCTCTCTGCCTGTGGTCAAGGCACCTACATGGACCCTGAAAGGGGAAACACTGCATCCTGGTCCTAAAGTTGTGGTGGAGAAAATGGGAACTGTTCATAGGCTCACTCTTAAACAAACTTCCGCAGACATGAGCGGCATTGTGTGCTTTATCACAGGAAGAGTTAAAAGCACTGCACATCTGTGTGTCATAAAACTTGATACTCAGCATGGGCCATGTGATTTTTATAGTGGTATCCAGCTGAGGGTAACCACTGAGAATCAACACATATGCACTTACGGTGCATAATACTCAACTATGCCACTATTTAAATACCAAATGAAATCATGAAATCATTAAATCTATTTTCTTTCAATGTGTTTGAAAGTGAGGCTTATAATTCATTTATTTTAAATCCAAATTTATTTAAAATCTTCAGTGCCATTTTTGCACATTATATCCCATTCTACGTGGTTTACCATCCATTAGGCTACAATTCTTGAATATTGCGCTGTCTAAATTTATGATCAAACACGTTGTGCTTTATTAAAATAAA

Function

symbol description
obsl1b Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to be active in synapse. Human ortholog(s) of this gene implicated in 3-M syndrome. Orthologous to human OBSL1 (obscurin like cytoskeletal adaptor 1).

NR:

description
Obscurin

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K19574 OBSL1; obscurin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_12152712_12167719.mRNA True 3241 mRNA 0.43 15 12152465 12167719

Neighbor

gene id symbol gene type direction distance location
CI01000009_12007202_12021667 MFSD6 coding downstream 130428 12006768 ~ 12022037 (-)
CI01000009_11947288_11963040 NAB1, NAB1B coding downstream 189425 11946457 ~ 11963040 (-)
CI01000009_11892743_11932618 GLS, GLSA, GLSB coding downstream 219847 11892689 ~ 11932618 (-)
CI01000009_11885290_11889329 NA coding downstream 262609 11884974 ~ 11889856 (-)
CI01000009_11812069_11833136 WDR75 coding downstream 319329 11811892 ~ 11833136 (-)
CI01000009_12167744_12175422 NA coding upstream 25 12167744 ~ 12175422 (-)
CI01000009_12176488_12184112 OBSL1 coding upstream 8435 12176154 ~ 12185660 (-)
CI01000009_12304891_12322499 NA coding upstream 136970 12304689 ~ 12322924 (-)
CI01000009_12486758_12498650 CALCRLA, CALCRL coding upstream 317907 12485626 ~ 12498650 (-)
CI01000009_12531562_12540003 NA coding upstream 363406 12531125 ~ 12540373 (-)
G59035 NA non-coding downstream 3925 12142828 ~ 12148540 (-)
G59071 NA non-coding downstream 27771 12122840 ~ 12124694 (-)
G59060 NA non-coding downstream 39617 12112590 ~ 12112848 (-)
G59059 NA non-coding downstream 40683 12110735 ~ 12111782 (-)
G59058 NA non-coding downstream 41947 12109062 ~ 12110518 (-)
G59088 NA non-coding upstream 20823 12188542 ~ 12188859 (-)
G59090 NA non-coding upstream 29430 12197149 ~ 12197440 (-)
G59094 NA non-coding upstream 32311 12200030 ~ 12200392 (-)
G59099 NA non-coding upstream 34207 12201926 ~ 12242338 (-)
G59096 NA non-coding upstream 81588 12249307 ~ 12263165 (-)
CI01000009_08858198_08860555 NA other downstream 3291902 8856310 ~ 8860563 (-)
G55814 NA other downstream 3724453 8425821 ~ 8428012 (-)
G53515 NA other downstream 6647217 5502395 ~ 5505248 (-)
G52828 NA other downstream 7920996 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 8890508 3261038 ~ 3262843 (-)
G59097 NA other upstream 120498 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 1807669 13975099 ~ 13978614 (-)
G59490 NA other upstream 1865845 14033564 ~ 14037873 (-)
G59811 NA other upstream 2694678 14862397 ~ 14887464 (-)
G59941 NA other upstream 2964385 15132104 ~ 15132503 (-)

Expression


Co-expression Network