LOC103033354 (hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347)


Basic Information

Item Value
gene id LOC103033354
gene name hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13942723 ~ 14050562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278687
aaaaaattaaaaaaaaaaaaaacacaacaatggGGGACACTGTGAAAGACAAACCTTAAAGACCTCAATTCAAGTTATCCAAGATCTCCACTTGCAGGATGGAAGGCTCAAACAATGCTTCCTCCAAGAACCCTGACTCGTTTTTTGACTCGTTTGACCAGCTTTTGTTGTAAGACAAGTTCCAGTTAGTGCTAGTAAACCTATATAAGCCTGGCCtgatctctctcacacacacgttCCCTGTTCCCAGCTCAAAGACTGAGACACAACACAATTCCGGCATAGCCCACATCTTGttttttgatttatttcactttttctttaaaatcagatttttttttctaagtccTGTTTGTACGTCCGCAGACCATTAGGTTTTAGATTTGACTGACTTTTTCTAAAGTAAGtaaaataatgatgatgatgattgctAGCTAATGTTATGTATGCACTGCTGCaacttcatacacacacaagtttaaagtttgtttagtgcccccccccacccactccatacacacacttttgtttctgtaaaactgtttctgttctgttcatCTCTCCCTGAAAGctgttttaatttgtaaaacaaCGCGTTTAGTTCGTTTCTACATGGACACACTTGTctctttttgctttgttttaattGTCATTTGTATTGTGTAATTGTTTGCAGAGCATACATTGTACAACACTGATTCAAATGTATGtcgaatttttttaaataaaaagtttaacaGCTTATCTTTAGTCTTTATTTTAGTCTAGAAATTCCTGCCTTTTAGGATATGGATATGGTAAGTTTAGCTTATCAAGAGTACTGCTTTCACCTTTTCACAGTTGAATAATTCAGTTTTTGACTGGATTGGGTAAAAGATTGTCTGTAAAGACTGTTAATCTGTTTTAAATACAGATCTGGGTTCTTTTGGATCCTTTTAGGATATCCTTTTCTTAAATATGTCCCTGGGTTAGAGGTTTGAATTGCAATCATGCAGCTTCTCTATCAGCAGccagaatcagagagagagtacagtaggtcatgctgcttctccatcagtagccagagtctgagaaagACTCTTAAGCAAACTCATATTATGGATTTTGCTTCCCTTATAGCCAGgcataaaatattatcacaatggAAGCCCCCATTTGACCATAAAAGCTTTTTAttggaaaaccttttttttccagTTATTGATTAATACAAGAA
>XM_007236465.3
ACGCAGCCCGAATCCCCTTCTGAGCACGCCAGGCGGACAAGCACACTTCTGAGTCGCCGAGTTCCCACCACAGTACCTTCCGTAGTACCGAACAGCGCTCAGACACACGCCGAGACCATGGACCAGCTCTGCAAGCTGTTCGTCGGCGGCCTGAACGTCCAGACCACCAACGAGGGGCTCCGCGCTCACTTCGAGCAGTACGGAAAGCTCACCGACTGCGTGGTGGTACAGAACGAGCAGCTGCAGCGCTCGCGGTGCTTCGGCTTCGTCACCTACTCCAGCGCCGAGGAGGCGGACGCGGCCATGGCGGCCCGGCCGCACGTGGTGGACGGGAAGAACGTGGAGCTGAAGCGGGCCGTGGCGCGGGAGGACGCCGGCCGGCCCGAGGCTCTGGCCAAGGTAAAGAAGATCTTCGTCGGCGGGCTGAAGGAGGACATCGAGGAGAACGAGCTGAATGAGTACTTCTCGCAGTTCGGCGTGATCGAGAAGTCGGAGGTAATCACGGATAAAGACACCGGCAAGAAGCGCGGCTTCGGCTTCGTGCACTTCGAGGACAACGACTCCGCCGACAAGGCCGTGGTGCTCAAGTTCCACACGATCAAGGGCCACAAGGTGGAGGTGAAGAAGGCGCTCACCCGGCAGGAGATCCAGGCGGCCGGCGGGGCCCGCGGAGGCCGGGGCCGAGGCGGCGGAGGCGGCAGGGGGATGGGGAGAAACCAAAATGGCTTcgcaggaggaagaggaggaggcggGTACAACAGCTATGGTGGCGGCTATGGAGGAGGCGGCTATGGCGGTGGAAACGAAGGTGGCGGCTATGGCGGCGGATACGGAGGCGGCTATGGCGCTGGTGGCGGAGGATACGGCGGCGGCTATGGTGGCGGCTACAGCGACCAGATGGGTGGCGGTGGGTACGGTGGCGGGAACGGCTACAGTGACTTTGGCAGCGGCTACGGCCAGCAGTCCTCCGGCTACGGGCCCATGAAAGGCGGGAACACCTACGCCGGCCGGAGCGGCGGTGGTGGCGGTGCCCCGTACCCACGCGGTGGAGGCGGCGGCGGCGGAGCTTCTGGATACGGCAGGGGAGGAGGATACGGCGCTTattagagatagatagataggttagctaactggcgttaatattattattgattgattgatcgtTCGTTAGAGCCACCATtgaaagaaaggagagaaagagagagtgagagactcGACAAGCTCTGTCCCATTTATTTCTCTTagctaaaatatattatttctcacttttttttttctttttttttttttttttggacagaatTCAGGCATCATCcgtaaaaaaaatccacaacttaaagaaaaaaaaaaacacaacaatggGGGACACTGTGAAAGACAAACCTTAAAGACCTCAATTCAAGTTATCCAAGATCTCCACTTGCAGGATGGAAGGCTCAAACAATGCTTCCTCCAAGAACCCTGACTCGTTTTTTGACTCGTTTGACCAGCTTTTGTTGTAAGACAAGTTCCAGTTAGTGCTAGTAAACCTATATAAGCCTGGCCtgatctctctcacacacacgttCCCTGTTCCCAGCTCAAAGACTGAGACACAACACAATTCCGGCATAGCCCACATCTTGttttttgatttatttcactttttctttaaaatcagatttttttttctaagtccTGTTTGTACGTCCGCAGACCATTAGGTTTTAGATTTGACTGACTTTTTCTAAAGTAAGtaaaataatgatgatgatgattgctAGCTAATGTTATGTATGCACTGCTGCaacttcatacacacacaagtttaaagtttgtttagtgcccccccccacccactccatacacacacttttgtttctgtaaaactgtttctgttctgttcatCTCTCCCTGAAAGctgttttaatttgtaaaacaaCGCGTTTAGTTCGTTTCTACATGGACACACTTGTctctttttgctttgttttaattGTCATTTGTATTGTGTAATTGTTTGCAGAGCATACATTGTACAACACTGATTCAAATGTATGtcgaatttttttaaataaaaagtttaacaGCT

Function

symbol description
hnrnpa0b Predicted to enable mRNA binding activity. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to human HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278687 False 1216 lncRNA 0.36 3 13942723 14050562
XM_007236465.3 True 2071 mRNA 0.52 1 13998047 14000117

Neighbor

gene id symbol gene type direction distance location
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding downstream 11811 13928962 ~ 13930912 (-)
sil1 NA coding downstream 44010 13889589 ~ 13898713 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 55637 13859221 ~ 13887086 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding downstream 144090 13780145 ~ 13798633 (-)
LOC111195730 NA coding downstream 165127 13774336 ~ 13777596 (-)
LOC111195849 NA coding upstream 1976155 16026717 ~ 16027163 (-)
LOC103026525 LOC108427881 coding upstream 1993616 16044178 ~ 16142579 (-)
trnae-uuc_23 NA coding upstream 2092726 16143288 ~ 16143359 (-)
cenpi cenpi coding upstream 2444794 16495356 ~ 16521829 (-)
tmem35a tmem35a,tmem35,LOC107724834,LOC107688707 coding upstream 2472524 16523086 ~ 16527085 (-)
G205387 NA non-coding downstream 108778 13833567 ~ 13833945 (-)
G205386 NA non-coding downstream 115336 13826512 ~ 13827387 (-)
G205378 NA non-coding downstream 163218 13768739 ~ 13779505 (-)
G205363 NA non-coding downstream 199376 13742620 ~ 13743347 (-)
G205361 hdac3,LOC103471067 non-coding downstream 254887 13685401 ~ 13687836 (-)
G205448 NA non-coding upstream 179763 14230325 ~ 14230606 (-)
G205456 NA non-coding upstream 241484 14292046 ~ 14292683 (-)
G205459 NA non-coding upstream 258763 14309325 ~ 14309690 (-)
G205462 NA non-coding upstream 287716 14338278 ~ 14346427 (-)
G205489 NA non-coding upstream 698825 14749387 ~ 14768117 (-)
LOC103033675 LOC108410893 other downstream 24338 13902203 ~ 13918385 (-)
G205375 NA other downstream 165102 13744353 ~ 13777621 (-)
LOC111195729 NA other downstream 202802 13733713 ~ 13739921 (-)
G204671 NA other downstream 2358649 11583200 ~ 11584074 (-)
G204584 NA other downstream 3298036 10644254 ~ 10644687 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other upstream 1357382 15407944 ~ 15567635 (-)
G205640 NA other upstream 1493355 15543917 ~ 15545622 (-)
G205670 NA other upstream 1781088 15831650 ~ 15832094 (-)
drp2 drp2,LOC107724836,LOC107593231 other upstream 2153375 16203937 ~ 16365647 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 3209224 17259786 ~ 17300993 (-)

Expression


Co-expression Network