LOC103033675 (LOC108410893)


Basic Information

Item Value
gene id LOC103033675
gene name LOC108410893
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13902203 ~ 13918385 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278693
AGGAGGCGGATGGTGGAGGAGGTAGAGTTAAGATGCAACACTGGGAGATATTTTATctttaaactgagttttatacattttactggaataaatatgatataaaccGGCTGCTGTCTGACTCAGACAAACCGCAGGAGAAACAGGAGGGAGAAATTCCTACAGACTTCACATGATAACAggtgTCTCTAAATGAGAAACAGGGGGAAGGATCAGGACGGCAGAACCGAGAGAACGGATCAGAGCTTTACTGACAGGATGAGGAAACCGGTATCAGTGTGTGGCGTGTCTGTAAACAGG
>XM_022684326.1
GAACAGGAGAGCAGGAGGCGGATGGTGGAGGAGGTAGAGTTAAGATGCAACACTGGGAGATATTTTATctttaaactgagttttatacattttactggaataaatatgatataaaccGGCTGCTGTCTGACTCAGACAAACCGCAGGAGAAACAGGAGGGAGAAATTCCTACAGACTTCACATGATAACAggtgTCTCTAAATGAGAAACAGGGGGAAGGATCAGGACGGCAGAACCGAGAGAACGGATCAGAGCTTTACTGACAGGATGAGGAAACCGGTATCAGTGTGTGGCGTGTCTGTAAACAGGAGGTTCCTTATTCCGCTGATGGTTCTGGGATTGATCTCGATCGTGTTCCTGAAGGTTCCTCTGTTCAACACTAACCCCAAACCAGTGCTGATCGATGTGGATCCCAGCCATCGAGAGGTaggatttattATCAGTATATTCCTCATACCCAGAGTGCGCATGTTGGGTAATTGCTTTCATGGTTCTCTGTGTTCCAGACTGAATAGCGGTCCTGTGAGGAACTTCAGTAGAGACGTGGGGAACCGGACCACCTTCAGGATGAGTTACCCTGAGGGAACCCCGAAGATCTGGGAGGACGAGGATCCGGAGCTCCAGTTTGTAGCTGTGATCTACAAATCTGTGGACTTTAACTGGCTTCATTCTGTGATTACAGGAGCAGGAGTCtcGCTGTGGGATAAGATATTTTTCTGGCAGAAAGTGCCGGAGAGTATTCCCGTTACTCCTTCAAAAATTCGCCTCCTGAACCCGGAGATCATCAGGCAGACGGCGCTGGACTTCCTCCACTACCCCAAACCTAAGCAGCGGCTGTGGGGATGGGATCAGAATATTCCAACATTAGGAGTCTCTGCTCTGAACCTGGCCACGTACCTGTGTGATGAGTTGAGCTTAGCAGGGTTCGGGTACCACCTGAGTCAGAAGGACACGCCCCTTCATTACTACGACAACCAGCCAATGACGGCCATGCTGAAGCAGGGGATGCACAACGTGGACCAGGAGACGGCGTTCCTGCAGAGACTGGTTACAGAGGGCGGGGTTTCAGACCTGACCGGCGGCATCCACTGCAGCTTCTGCTCGCGCTGATCCTCCTCACactgatattttacattttatttcatgtttttattcttatttttacacTGAACATGTTTGAAGGTTCATGCTTTCGCTGCTAAAGAGTTTTACTGCAAAGCTACAGTGCTGTGGAAGCGACGTGCATGGCATTATGTGCTCtcgtttttcatttttaaatctaatttattaTTGTGCTGCTTATTTGATAAAACGTTTTAAGTTGAAGGAATCAGTAAAATGATCCCTGAAATGCATTAAAGTTAATTGTTATCTTAGCTAAAAATAACCACAATAACAATCTCAACTGTGAAATATCTTGTTTATGAACCATTTTATACTGATTAATTAAGCTCAATGAAAAACTCCAAAACAGACATTGCCAAAAAGAGAATATAGCCAGATTACTGCTATATTTCAGACCACGCCATCTCCATCTCCAGATCAGATCTGATTAGATTTATTGCTACATCACATGTAATACATAAGTAATGTACAGGTGCACAGGtgtacaggtgtacaggtgagtgAAAAATGTTGCGGCATGATCTCACTTAGAATGTAGAAAAAACAGAATTCCTGAATATGTACAACatcaagtaaaataaatagaaaatacacACTTAAATTACAGTATACACATTAACTTACACTGTGAATGTACAATATTGCACTGTTGTATGTATTTACAGGTATGTATAGGGCTGTTTAGTAGGTGCAGTGTACTGTGGGTAATGTGCAGGTGCAGAGTGAGTTCGTATGGGAGGGAATCGTAGGACAGGTGAGGTAGACTGTGTTAGGTTGGCAAGAAAACACTGTCCTACTGGCTGTTCAGCAGCCTGACTGCCTGTGGAAAGAAACTGTTCTGGAACCAGCTGATTCTGGTCTTCTGGTTTTCTTCTGAACCTTCTTCTGCTCGGCAGCTGTGAGCTGTTGATTGGTTAATCTGGGAAATGAATAGTGCACATATGCTAATCTGCGCTCAATTTAGTTCTGGACATTGGTTTGGTCGAACTttcagggctctcaagttttgaagtcGGAGTTCAGAATCAGATTTTGGTGGATTTTTCAGTTTGGCGATTAACCAGTAAaggaagagataaaaaaaatcacagattttAGCAATCTATGAATGAGCCATCAgttgtgcaccgtgcagcttgatttagggcgtgtcggtgtgtctttgctatcataacaacgggaaaagtacaccttgca

Function

NR:

description
PREDICTED: lactosylceramide alpha-2,3-sialyltransferase-like isoform X3

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0047291 lactosylceramide alpha-2,3-sialyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278693 False 297 lncRNA 0.45 2 13912597 13918373
XM_022684326.1 True 2322 mRNA 0.44 6 13902203 13918385

Neighbor

gene id symbol gene type direction distance location
sil1 NA coding downstream 3490 13889589 ~ 13898713 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 15117 13859221 ~ 13887086 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding downstream 103570 13780145 ~ 13798633 (-)
LOC111195730 NA coding downstream 124607 13774336 ~ 13777596 (-)
LOC103037229 NA coding downstream 135112 13765516 ~ 13767091 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding upstream 10577 13928962 ~ 13930912 (-)
btk btk coding upstream 22867 13941252 ~ 13973029 (-)
LOC111195849 NA coding upstream 2108332 16026717 ~ 16027163 (-)
LOC103026525 LOC108427881 coding upstream 2125793 16044178 ~ 16142579 (-)
trnae-uuc_23 NA coding upstream 2224903 16143288 ~ 16143359 (-)
G205387 NA non-coding downstream 68258 13833567 ~ 13833945 (-)
G205386 NA non-coding downstream 74816 13826512 ~ 13827387 (-)
G205378 NA non-coding downstream 122698 13768739 ~ 13779505 (-)
G205363 NA non-coding downstream 158856 13742620 ~ 13743347 (-)
G205361 hdac3,LOC103471067 non-coding downstream 214367 13685401 ~ 13687836 (-)
G205423 gsr,LOC107680979 non-coding upstream 67445 13985830 ~ 13991653 (-)
G205401 NA non-coding upstream 74368 13992753 ~ 13995460 (-)
G205448 NA non-coding upstream 311940 14230325 ~ 14230606 (-)
G205456 NA non-coding upstream 373661 14292046 ~ 14292683 (-)
G205459 NA non-coding upstream 390940 14309325 ~ 14309690 (-)
G205375 NA other downstream 124582 13744353 ~ 13777621 (-)
LOC111195729 NA other downstream 162282 13733713 ~ 13739921 (-)
G204671 NA other downstream 2318129 11583200 ~ 11584074 (-)
G204584 NA other downstream 3257516 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 4143136 9723402 ~ 9759067 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 24338 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 56292 13974677 ~ 13978450 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other upstream 1489559 15407944 ~ 15567635 (-)
G205640 NA other upstream 1625532 15543917 ~ 15545622 (-)
G205670 NA other upstream 1913265 15831650 ~ 15832094 (-)

Expression


Co-expression Network