CI01000009_12198114_12221988


Basic Information

Item Value
gene id CI01000009_12198114_12221988
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12196699 ~ 12221993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_12198114_12221988.mRNA
CTATAAAAAGACATATATAGAGTGCTCAAGTCATATGTACTACTTTTATTATAATTCCCTTATAATCACTTTGGAGCTTGATGGCAACTGCCTCTTTTCAGTTCCATTAAATGAAAGAGAAAAGCAGTTTATAGCAAATTGAACTATTCCTTTAAGTGTCATTTATTATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCATAAGACCTTCGTTCATCGGAGCGTGTGTCAAACTGCCAAAGTCACGTGATTTCAGTAAACGAAACTTTGTTACGTCATAAGTGTTTCAAAACGTTTTGAAATTTCAATGGTTCACGTGACTTTGGCAGTTTGATGCGCGCTCCGAGCCACTGATTTGAAACAAAAGATTCATAAAGCTTCGAAGCTTCATGAAGTAGTGTTTTCAAATCGCCCTTCATTAGATATTGTTGAATAAAGTCGTTATTTTGTTTTTTTTGGTGCACAAAAAGTATTCTCGTCGCTTCATAACATTAAGGTTGAACCACAGTATTCATATGAACTGTTTTAAATATGTCTTTAGTAGCTTTCTGGGCATCTGAAAGTGTTAATTATCTTGCTGGAAATGGAGGCCTCACTGAGCCATCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGAGGAATGAAGGTCTTACGGGAGTGGAACGACATGAGGGTAAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGATTGAACTACTGTAGTCACATTAACTATTTTAATGATGTCTTTACTACCTTTCTGGGCCTTAAAAGGGGTGACTGTGTTGCAGTTTATCGAAGGCCAGATAACTCACAGATTTCATCAAAAATATCTTCATTTGTGTTCTGAAGATGAACAAAGGTCGCATTTGAAACGACATCAGGGTGAGTAATTAATGACACAATTTTCCTTTTTGAGTGAACTAACCCTTTAATACATTCTTTGCTTTTATAGGAATGCAAAGCTCACCAGGGCTGCGAACGTGTTTCAACAGCAGCCCGCGAGCTGCTGATCACAGCTTTGGCTCCAAAGGCAGTGACTGAACTACCAGCATCAGACTCCTCGGCGATCCTCCCCATCTCCTCCCTCTCCTCCGCAGTGAGAGGTTACCCATGGTGCAGAGTGCTCATAATGAGAACATGCTGGAGATGCTTTGATGAGGCGGCCTTACTGGTGTATGCATGCATGTGTGTGCCAGTGGGTGTTCCTGCAGTCGTAGGTGTGTGTGTGTGTGTCTGTTCCCCTTCCTCTTTTGTTGACCCACTGTTCCCAAGAAAGCTGACCTGACTGGGAAAACAAAAGCTGCACTCTTATTGACCCACTTCACACTGGTGCATAAATCTGATTGGGTGACATGTTCTTTTACCTCACACTTGTTGTAAAGAATGTGCGCTTTGGGTTCAACTTGAAAGAAACGGAAATATTTTGTGATCACTCTTTGTTTAATCTTATACTATGTCTAGAAGCATGTTTGCCCAAAGTGGTCATTTGCAATCGGTGTCTCGCGTTTTTGGAGCGGTTCATCTGCTGCGTGTTCATTGCTCTGTCACCGGCTGCATCGCAGAGAAGAGCAGTGTCCACAGACAGTTCTCTTGTTTCACCCCACATAAATCTTTCTCCCCAGTGGTGTGAAAGACGTCTGTCCCCTGGGCAGGGGAGATTACCATCAAGGGCAGTGGGCTTGAGAACAAAACACAGATTTGCAGAGGTCCTTTACCCATTTCTGTCTCTCCTGAGAGTTCTGGGAATGGGGGCTGAGGCTTTTTGGCTGAAATTTCCCAAGCTGCTTTGCTTTATGATTTGTGGTGGGACTTTCTCTGGAGGGCAGAGGGAGATACGTGTTGAGCTGACAGTGAAGGGAAACAAGAGACTCTTAAACTGTGATCCTGTCAGGTGTAGCTCCCCTCAACCCAACAGCGGTATCTGCCCACATTCCTGCCATGCATTCTGTTCACCAGTCTGCCTGCTCTTACAGCGCTATTCAGTTACACAATGTCATTCAATACACCTGATCTTTGCTAAACAGACCTTTGGACAGTTACTGAGGAACTTATTTAGCCGACTACTCGGCCACAGGCCAACAGCAGCCAAAATGTCTCGATGGCCGTGGTTTCAGTACCTAGAGGCAACTTTCTCCATTAGCTTTTGTTGTATACCTTCAGGGATCACCAAGACCGATATCGTTTGAAGGAA
>TU65893
ACGACATGAGGGTAAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGATTGAACTACTGTAGTCACATTAACTATTTTAATGATGTCTTTACTACCTTTCTGGGCCTTAAAAGGGGTGACTGTGTTGCAGTTTATCGAAGGCCAGATAACTCACAGATTTCATCAAAAATATCTTCATTTGTGTTCTGAAGATGAACAAAGGTCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_12198114_12221988.mRNA False 2254 mRNA 0.43 5 12196699 12221993
TU65893 True 221 lncRNA 0.36 1 12197405 12197625

Neighbor

gene id symbol gene type direction distance location
CI01000009_12130688_12146560 CTDS1, CTDSP1 coding upstream 49757 12130688 ~ 12146942 (+)
CI01000009_12050866_12109305 SPEG coding upstream 86601 12050773 ~ 12110098 (+)
CI01000009_12028975_12032758 NA coding upstream 163662 12028495 ~ 12033037 (+)
CI01000009_12022660_12022944 NA coding upstream 173311 12022560 ~ 12023388 (+)
CI01000009_11993879_12004644 NEMP2 coding upstream 191934 11993644 ~ 12004765 (+)
CI01000009_12249416_12290497 COL18A1 coding downstream 26970 12248963 ~ 12290598 (+)
CI01000009_12351325_12366549 PCBP3 coding downstream 129332 12351325 ~ 12366597 (+)
CI01000009_12387605_12388405 LRRC3 coding downstream 163229 12385222 ~ 12390665 (+)
CI01000009_12432736_12435509 NA coding downstream 210545 12432538 ~ 12436017 (+)
CI01000009_12504532_12504815 NA coding downstream 282387 12504380 ~ 12504894 (+)
G57850 NA non-coding upstream 7879 12188545 ~ 12188820 (+)
G57737 NA non-coding upstream 24559 12171363 ~ 12172140 (+)
G57724 NA non-coding upstream 28478 12167531 ~ 12168221 (+)
G57813 NA non-coding upstream 258060 11938378 ~ 11938639 (+)
G57792 NA non-coding upstream 361739 11834738 ~ 11834960 (+)
G57704 NA non-coding downstream 83646 12305639 ~ 12372174 (+)
G57733 NA non-coding downstream 104130 12326123 ~ 12350280 (+)
G57871 NA non-coding downstream 178485 12400478 ~ 12401052 (+)
G57890 NA non-coding downstream 232793 12454786 ~ 12455080 (+)
G57896 NA non-coding downstream 240553 12462546 ~ 12462952 (+)
G57811 NA other upstream 261448 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 429755 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2340112 9853929 ~ 9856587 (+)
G56100 NA other upstream 3066413 9129300 ~ 9130286 (+)
G53651 NA other upstream 5948307 6245564 ~ 6248392 (+)
G57682 NA other downstream 603476 12825469 ~ 12892339 (+)
G57691 NA other downstream 684451 12906444 ~ 12918465 (+)
G57701 NA other downstream 784650 13006643 ~ 13023138 (+)
G58028 NA other downstream 918385 13140378 ~ 13143608 (+)

Expression


Co-expression Network