G205637


Basic Information

Item Value
gene id G205637
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 15531029 ~ 15532394 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278958
gacagaggagctaacagcaccagacgtgacaaagagaaaaagtgagaaagagaaacagggaaagatagagaaagagagagagagagagagagggagagagggagatgtTAGGCAGATataaccaataataataatacacactgATTAAGAaatttttaacacttttgactggtgatTTTTTGATGAGGTCCTGCAAACAGTTGCTCTAACTTctacctttttttctttaaatgcatttatgcCACCATATcaccatatcatatcatatgcaacaATACCATTTAgtaatttatttgcaaattttgttgcagtagtgtattatttaaatattttttatatttatatgtttttaagtcaacgttttgtcatatcgccaagtatatcgagTATCgctatcgtgaaaataccatgaaaatattgtgattttattttagggcctaTTTTATCGCCCACCCTTAagcacaggacaccattaggaacctctacaactataACTACATCTACTAATGTATTACACACTACTATCTACTATACTCTGTATGTGTATCTTATACTTCATTCTGAAAAACATTGCCAAAAatcccacaattccctctgggTGCAGCCAtgtttttgatgatggtgtgcatTTTAAAGCTTTGATTATTAATATTCCATTCCATATATCATTGCATAGATTTTACACCTGTACAGGTGTTAAAATCTGAAGATGTGACAGTGACAGTAGGCGGagtttacagctttaaaactcTACTCTTCTCCTCTGAATAATTAAAGTTTGCATCACGTTTATTTTGCGTGAAATATGAAGGAAATCTGTTTAAAATAGACATTAATTTAACACACCGCAGAACCCAAACACTGAATGAGTCACAGCTGATTCTGAGTCTCCGGTTTCTGAAGCCTCGCGGCGAGACGTAGCGATGCTAACAGGTTTTATACTCCTGCTGTTTGATTACACCACACATTATATGTGTACGAATACAGTCTTCAATATATCAATGTGTGAAGATCTGTGATTGACATACTGATAATGTGTATATACAACTCTGAACAAAGAAAATgatgattt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko04550 Signaling pathways regulating pluripotency of stem cells
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU278958 True 1072 lncRNA 0.35 2 15531029 15532394

Neighbor

gene id symbol gene type direction distance location
btk btk coding downstream 1558000 13941252 ~ 13973029 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding downstream 1600117 13928962 ~ 13930912 (-)
sil1 NA coding downstream 1632316 13889589 ~ 13898713 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 1643943 13859221 ~ 13887086 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding downstream 1732396 13780145 ~ 13798633 (-)
LOC111195849 NA coding upstream 494323 16026717 ~ 16027163 (-)
LOC103026525 LOC108427881 coding upstream 511784 16044178 ~ 16142579 (-)
trnae-uuc_23 NA coding upstream 610894 16143288 ~ 16143359 (-)
cenpi cenpi coding upstream 962962 16495356 ~ 16521829 (-)
tmem35a tmem35a,tmem35,LOC107724834,LOC107688707 coding upstream 990692 16523086 ~ 16527085 (-)
G205632 NA non-coding downstream 1395 15512563 ~ 15529634 (-)
G205631 NA non-coding downstream 22299 15507184 ~ 15508730 (-)
G205630 NA non-coding downstream 30553 15500108 ~ 15500476 (-)
G205625 NA non-coding downstream 81439 15449203 ~ 15449590 (-)
G205623 NA non-coding downstream 123237 15407415 ~ 15407792 (-)
G205641 NA non-coding upstream 13308 15545702 ~ 15548570 (-)
G205643 NA non-coding upstream 40891 15573285 ~ 15617923 (-)
G205646 NA non-coding upstream 64753 15597147 ~ 15611705 (-)
G205660 NA non-coding upstream 150648 15683042 ~ 15684079 (-)
G205663 NA non-coding upstream 195457 15727851 ~ 15728967 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other downstream 1480467 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 1552579 13974677 ~ 13978450 (-)
LOC103033675 LOC108410893 other downstream 1612644 13902203 ~ 13918385 (-)
G205375 NA other downstream 1753408 13744353 ~ 13777621 (-)
LOC111195729 NA other downstream 1791108 13733713 ~ 13739921 (-)
G205640 NA other upstream 11523 15543917 ~ 15545622 (-)
G205670 NA other upstream 299256 15831650 ~ 15832094 (-)
drp2 drp2,LOC107724836,LOC107593231 other upstream 671543 16203937 ~ 16365647 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 1727392 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 2311572 17843966 ~ 17852191 (-)

Expression


Co-expression Network