G205641


Basic Information

Item Value
gene id G205641
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 15545702 ~ 15548570 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278964
AACTGAAACTGCACACCGGCTGGGCTGGACAGAGGAATTATGGGCTGTTGTAAAAGCAAATGTAGTAGCCAGGCCTGGTGGCTTATCCCTGTAATAAAAGCACCTTGGCAGCGGGATTAGGGGACCTGTATTTATTTGGGTGGATGAATAATAAAAGCGTGGAGCAGAGGAATGAATAAGTCTGCAGATTGAGTGTGATCTCCGATTTAAAGCTCCGCTCTATATAATGTCTCTGCAttagaggatagagagagagatagagagagagggagagagagagagagagagagagagagaagagagagagagagataaactgtgtaactgtgttaaTGCCAGACGTCTGGGCATTTTCCAATTTTCTCATGGCTGAGATGCTGCTGATGGTTCTGATAAAGCTCATTCATGGTCTGCATACGAACCCATAACACACTGAGCACGGCCCAGGGCTGGACGATACATTTATAAActgatatcacgatatatttcCTAAATTTAATcgatatacaatataatttctatattgatataaatagtataaaagcaatagcacatgttgcacaaaatcactgcactgaaagagctgagagctgagtgataaagtaaaaatattgtatcacGATATTGGAAGATATTTTCACAATGCACGATATTTACGATATTTATCGCAATGTTTCGACAttgcagacaaaatgcatcagcagtggcAGAGATTTAAAACCTCAGAAACTGCAATTTCATTTTTGTATTAGATTTAGTTTTGGCTGAAAATCATCATACTCTGTTAGAACagaggggtgggacaatatagcGATACCACAATATATTGGATCGATACGTGGCGCCAAATACcgatatttttgttaaaaagcaGACACTCTGAACTGTAAGTGTAAGttacttatttttgttattttaggaattctcaccttattttaagtcattttaactcaaaataagcacaaaaaatctgtgatttttcAGAAATCGAACAAAAAATTAGCAGACTTGTTTTATCTAAATATGTATCTAAACATATACGCCTcaattatggattttttttctttttgagtcTGAGTGAGACAGATGTGTTTTTATTCTCTGAATATGACGCTCAGATCGTTTCTCCTCTATTGTGACATTTATAAAAGACAGTGGCTCAATTTCCAGATATTATTGTTTAAGGAAAATGTTGTCAGCGTACGTTTGCTTCAGTAATGCTAAATTAATCATATGTttccctcagcagtgctattctaatgataTGTTTACTTCAGTAATGCTAAACTAATCATACGTttccctcagcagtgctattctaatcatacatttacctcagaagtgctattctaatcatatgtttatttcagtaattctacACTAATAACACTCTTACCTCAACAGTACTGTGCTATTGTCTCTCGCCCGTGTTTTTGAGTCTGAGTGAGACAGATGTGTTTTTATTCTCTGAATTTGACGCTCAGATCGTTTCTCCTCTATTGTGACATTTATAAAAGACAGTGGCTCAATTTCCAGATATTGTTGTTTAAGAAGAATGTTGTCAGCGTAATTACACGCCCGTTTATGTGGAGCGCAAACAAACAGGGGGGGTGTGAAATGGCTGATAATAGCTCCGTCATGCTTTGCAAGCCCGGGCCTGAAAGCGCTTGACTCCACAAGGCCGGGTTTCCCAGAGGTCTGACTGGGACTCGGAGACCGGGGCTCAGTTCCGATTAGCGCTGCAGCTCCACGTCCCCGAGCTGCGTGACCGTTCACCAGCCTCACGTCATCCAGAAACCCACGTCTGCTGTGGAGACTGAAGAGCTCAGAGCTGAGAAATACGACTAGAGACGTGAGAAAATATCCATATATCAGatcattgcaatatttatttttatggtaGTGTATCAATTTCTTAAAGCACTTATACAAATGTTTAGAACCGTAACTATtcacaaaacataaaaccagcAGAATAAACCAAAGTAAAGAATcgatttataaatatttacctcagcagtgctattctaggcTGTTCTAGTTATACAGTGCTAAGctgtgcttttctaatcatacatttacctcaacagtgcaattttaatcatacatttacctcagtagtgcttttCTAATAATAGGTTCACATCAAAAAGGCTGTTcttgttacacagtgttaagCAGTGCTTgcctaatcatatatttacctcagtagtgctattctaatattTGGTTTACTTCAGTAATGCTAAACTAATTATATGTTTCcctcagtagtgcaattttaattataggtttagctcagtagtgctattttaatcacaaatttacctcagcagcactgttctaatcatacatttacctcagcagtcctgttctaatcatacatttacctcaacagtgctgttctaatcatatattttcttAAGAAGTGCTGTTCAAATCATAGGTTTACGTCAACAGTCCtgttctaattatacatttacctcaacagtgctgttctaatcatatatttacctcaacagtgctgtTCTAAACGAATAAAGAAAGGAGAGAAGCTGGTATTTGGACGGAGCACAAGTGCATGTGTACCtctgtagtgctattctaatcatatgtttactttagcagtgctataataatcacaaatttacctcagcagtgctattctatttatacatttaccttaacagttttattctaatcatacatttacctcagaagtgctgttCTAAACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278964 True 2737 lncRNA 0.37 3 15545702 15548570

Neighbor

gene id symbol gene type direction distance location
btk btk coding downstream 1572673 13941252 ~ 13973029 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding downstream 1614790 13928962 ~ 13930912 (-)
sil1 NA coding downstream 1646989 13889589 ~ 13898713 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 1658616 13859221 ~ 13887086 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding downstream 1747069 13780145 ~ 13798633 (-)
LOC111195849 NA coding upstream 478147 16026717 ~ 16027163 (-)
LOC103026525 LOC108427881 coding upstream 495608 16044178 ~ 16142579 (-)
trnae-uuc_23 NA coding upstream 594718 16143288 ~ 16143359 (-)
cenpi cenpi coding upstream 946786 16495356 ~ 16521829 (-)
tmem35a tmem35a,tmem35,LOC107724834,LOC107688707 coding upstream 974516 16523086 ~ 16527085 (-)
G205637 NA non-coding downstream 13308 15531029 ~ 15532394 (-)
G205632 NA non-coding downstream 16068 15512563 ~ 15529634 (-)
G205631 NA non-coding downstream 36972 15507184 ~ 15508730 (-)
G205630 NA non-coding downstream 45226 15500108 ~ 15500476 (-)
G205625 NA non-coding downstream 96112 15449203 ~ 15449590 (-)
G205643 NA non-coding upstream 24715 15573285 ~ 15617923 (-)
G205646 NA non-coding upstream 48577 15597147 ~ 15611705 (-)
G205660 NA non-coding upstream 134472 15683042 ~ 15684079 (-)
G205663 NA non-coding upstream 179281 15727851 ~ 15728967 (-)
G205667 NA non-coding upstream 251233 15799803 ~ 15800274 (-)
G205640 NA other downstream 80 15543917 ~ 15545622 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other downstream 1495140 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 1567252 13974677 ~ 13978450 (-)
LOC103033675 LOC108410893 other downstream 1627317 13902203 ~ 13918385 (-)
G205375 NA other downstream 1768081 13744353 ~ 13777621 (-)
G205670 NA other upstream 283080 15831650 ~ 15832094 (-)
drp2 drp2,LOC107724836,LOC107593231 other upstream 655367 16203937 ~ 16365647 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 1711216 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 2295396 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 2491105 18039675 ~ 18041939 (-)

Expression


Co-expression Network