G205663


Basic Information

Item Value
gene id G205663
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 15727851 ~ 15728967 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU278988
TAAGGTATGCTGaggctgattaaaaaaaaaaaaaaagtcatgaagaaagataaaatatgagatctgtaaaaaaacaaaaagttaaaaggagatctcaaaagaaaaaaagaaagaagaaactcttaaaataaataaaggaaaaatacagatttgtaaagaaatgaaaaacaaaaataggagatctcaaaataaataaaaaaagaaaaaaagagatttcaaaagaaaaaaaaagaaaaaatgagatGTAaagaaatcaaaagaaaaaagatctctaaagaaataaataaaatagatttcaagtaataaagaaaaataaaggagatcttaaaataaataaagagaaaatagatctcaaaataaagaaaaatatagaagatctcaaaaaagagaaaatataggAGTTCTCAAAAGAAATAAGATATCAAACATGTAGAACAAAATCAGGAATCTCAAAAGTAAAAAGctctaaaaagaaaataaaggaaaaaaagaaagctcTCAAAAAAGAGCTCCAAAAATGGAAGATCTTAaaagaaatcaagaaaaaatggatataaaaaatatagggaaaaaaatgaagtctcaaaaatctaaaaagtaaaaacctCTCAAAATAAAAGGGAATATCTCAAAAGATTAAACGGGAAGAACCTCaaaagaaaacaatgaaaaaaggcTGCATATAGCAAATTCCTCTTTTGAAGTTTGTCTATCCTTTGTTTTGAGCCATGTATCATTTCTATTGTTTGATTTTCCCGCCTTTTCCCCTCTTGATTAAGGGGGTGTAATTCTGCAGCCTGTGCTCCTGTGTTGGTGGGGCAGTAGTAGAGTAAGAGTTTTCCAGCGCTGACTGGGTTGTTGGTTCAAGCCCTGCtttgagtaatccagctcacaCACAGTTAAAATCACTCACTGTCCAGAATTCATCATATCATAATATAACCATTTCATATTAACAGCTCATAATAGTATGTTAAGTGGACTTTCCTCgttgcttctttttcttttattcagattttatataaaaaaagttttgttaaaattgcactatatatatagtaatatattgctagatatacagctctggaaaaaatgaagagcacttcagtttctgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278988 True 1117 lncRNA 0.28 1 15727851 15728967

Neighbor

gene id symbol gene type direction distance location
btk btk coding downstream 1754822 13941252 ~ 13973029 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding downstream 1796939 13928962 ~ 13930912 (-)
sil1 NA coding downstream 1829138 13889589 ~ 13898713 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 1840765 13859221 ~ 13887086 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding downstream 1929218 13780145 ~ 13798633 (-)
LOC111195849 NA coding upstream 297750 16026717 ~ 16027163 (-)
LOC103026525 LOC108427881 coding upstream 315211 16044178 ~ 16142579 (-)
trnae-uuc_23 NA coding upstream 414321 16143288 ~ 16143359 (-)
cenpi cenpi coding upstream 766389 16495356 ~ 16521829 (-)
tmem35a tmem35a,tmem35,LOC107724834,LOC107688707 coding upstream 794119 16523086 ~ 16527085 (-)
G205660 NA non-coding downstream 43772 15683042 ~ 15684079 (-)
G205643 NA non-coding downstream 109928 15573285 ~ 15617923 (-)
G205646 NA non-coding downstream 116146 15597147 ~ 15611705 (-)
G205641 NA non-coding downstream 179281 15545702 ~ 15548570 (-)
G205637 NA non-coding downstream 195457 15531029 ~ 15532394 (-)
G205667 NA non-coding upstream 70836 15799803 ~ 15800274 (-)
G205778 NA non-coding upstream 103330 15832297 ~ 15938295 (-)
G205782 NA non-coding upstream 152704 15881671 ~ 15882056 (-)
G205795 NA non-coding upstream 285262 16014229 ~ 16014683 (-)
G205799 NA non-coding upstream 325069 16054036 ~ 16091671 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 160216 15407944 ~ 15567635 (-)
G205640 NA other downstream 182229 15543917 ~ 15545622 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other downstream 1677289 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 1749401 13974677 ~ 13978450 (-)
LOC103033675 LOC108410893 other downstream 1809466 13902203 ~ 13918385 (-)
G205670 NA other upstream 102683 15831650 ~ 15832094 (-)
drp2 drp2,LOC107724836,LOC107593231 other upstream 474970 16203937 ~ 16365647 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 1530819 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 2114999 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 2310708 18039675 ~ 18041939 (-)

Expression


Co-expression Network