CI01000009_12351325_12366549 (PCBP3)


Basic Information

Item Value
gene id CI01000009_12351325_12366549
gene name PCBP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12351325 ~ 12366597 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_12351325_12366549.mRNA
GTGACTGGTTGGCTGCTGAACCATCATTCTCGTCCTTCTCCTGGGGAATTCCTGTCACGTGACCATATTCCTGCTTCACCTCCACTCCTAGTATGGAACCCAACAAAGTCCAGACAAGGTGAATCAGGGGTCGTCAGTACCAGTGACCATTTAGACTCGTTAAATCTCTGTAAACAAGGACTGAATATAAATAGCATTTTTGTGAGGAAATTTGTTCCAAAATGTTCTGTTTATGCTCGCAAAGATTTGATTTGTTTGTTTTTATTCCTGCAGGAAGTGGGAAGCATCATTGGAAAGAAAGGGGAAACTGTGAAGAAGATGCGTGAAGAGAGCGGTGCTCGCATCAACATCTCAGAAGGAAACTGTCCTGAGAGGATCGTCACCATCACTGGACCCACAGATGCCATCTTTAAGGCCTTCGCTATGATCGCGTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGCCCAGCCACCAGTAAGCCCCCTGTCACTTTGCGCCTTGTGGTGCCCGCCAGTCAGTGCGGCTCCCTCATTGGCAAGGGAGGCTCAAAAATCAAAGAGATGAGAGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGCTTACACAATTCAGGGACAATATGCCATTCCACACCCAGATGTCACCAGTCTTCTAAAGCTCACACTCACTGTTGACACCATCATGAGTGTGTATACAGTGCTGTTTATCCTAGGCTGTCTCTCGAGCTTCCTTCTGCTCTCTGATCCAGGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCGCAGATCAAAATAGCTAATGCCATGGAAGGGTCATCAGAGCGCCAGATCACCATTACAGGAACCCCCGCCAACATCAGCCTTGCCCAGTACCTCATCAACGCAAGGTTCAGAGACGTGGCAGCCATGTGGAATGACCCCTCATCAATGACTACATCCTGAAGCCCCAAACTGCTTTCATTATCTGAAGCTATCAGCAGCTGATTCCCA

Function

symbol description
pcbp3 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; otic vesicle; pleuroperitoneal region; retina; and tail bud. Orthologous to human PCBP3 (poly(rC) binding protein 3).

GO: NA

KEGG:

id description
K13162 PCBP2; poly(rC)-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_12351325_12366549.mRNA True 1131 mRNA 0.49 10 12351325 12366597

Neighbor

gene id symbol gene type direction distance location
CI01000009_12249416_12290497 COL18A1 coding upstream 60727 12248963 ~ 12290598 (+)
CI01000009_12198114_12221988 NA coding upstream 129332 12196699 ~ 12221993 (+)
CI01000009_12130688_12146560 CTDS1, CTDSP1 coding upstream 204383 12130688 ~ 12146942 (+)
CI01000009_12050866_12109305 SPEG coding upstream 241227 12050773 ~ 12110098 (+)
CI01000009_12028975_12032758 NA coding upstream 318288 12028495 ~ 12033037 (+)
CI01000009_12387605_12388405 LRRC3 coding downstream 18625 12385222 ~ 12390665 (+)
CI01000009_12432736_12435509 NA coding downstream 65941 12432538 ~ 12436017 (+)
CI01000009_12504532_12504815 NA coding downstream 137783 12504380 ~ 12504894 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding downstream 279887 12646484 ~ 12653857 (+)
CI01000009_12854692_12859028 NA coding downstream 487596 12854193 ~ 12861031 (+)
G57733 NA non-coding upstream 1045 12326123 ~ 12350280 (+)
G57850 NA non-coding upstream 162505 12188545 ~ 12188820 (+)
G57737 NA non-coding upstream 179185 12171363 ~ 12172140 (+)
G57724 NA non-coding upstream 183104 12167531 ~ 12168221 (+)
G57871 NA non-coding downstream 33881 12400478 ~ 12401052 (+)
G57890 NA non-coding downstream 88189 12454786 ~ 12455080 (+)
G57896 NA non-coding downstream 95949 12462546 ~ 12462952 (+)
G57900 NA non-coding downstream 103685 12470282 ~ 12470604 (+)
G57903 NA non-coding downstream 107338 12473935 ~ 12474530 (+)
G57811 NA other upstream 416074 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 584381 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2494738 9853929 ~ 9856587 (+)
G56100 NA other upstream 3221039 9129300 ~ 9130286 (+)
G53651 NA other upstream 6102933 6245564 ~ 6248392 (+)
G57682 NA other downstream 458872 12825469 ~ 12892339 (+)
G57691 NA other downstream 539847 12906444 ~ 12918465 (+)
G57701 NA other downstream 640046 13006643 ~ 13023138 (+)
G58028 NA other downstream 773781 13140378 ~ 13143608 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding CM030137.1 CM030137.1 17384589 ~ 17398019 (+)