G206000


Basic Information

Item Value
gene id G206000
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16801936 ~ 16802937 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU279419
TTTAagatcagtaatcagatttctcagtGCATGTATATTTGTTAAATCAGACTTTGgtataaaaatctaattaagAAATCTAATAGAGAGAGCTgaattttagctcagtaatcagatttctctGTGCATGCATATTTCTTAGATCAGACTTGAGTCAATAAATCTGATTAGGAAATCCGATGTgcatgtatactcttaaccggagtaCTCTGCACAGGACTAAAAACAGCACATCATTATAAGCACAGCAGCTGAGATaaataatctttattttctATCTGATTTATGATCATATTGCAGATCAATGTGTTAAATTCGGGTTTTACATGatgtttacaatgtttttacgTCTTATTCTGCGAGTTGATTGGCTGGTTacaaagcaaaaatctgattattgtcCGACTCATGTTATCTAAAGTATATGTTAACAAAATCCAGCattctgcagtaatcagattggtaTTATGAAGTGAATGTAAACGCACTCACTGTTCTGCCAGGAGCATCAGATTATTTATCAGTTTGCACTAAATAATAACTGAAGCCTTCCATGCCATTCAAAAGCATtatatacacttacacacaattacacacaaatGACCAAATTCTGCCTTTTGCGCTCTTATTTTTTGGTAAGggatatttgttgttttttcctaGTCAGTCtctatatagttatatatatatatactgtatgtatgatgGTGATGCTGTAGGAGGGTATATTTATGGTCTGGATCGGTACTGAGAAACACTATACTTTTATGCAAATCAATCGAAGACAACCAACGGAACATCATCCCTCCTTTCTAAGTgtatgtttttggatttgtacACTGACCTGATTGTACCGGTGATCTTTTATCTGAAGACATTAAAGAGTTGATTTTCTGGGATTCGCTTCTTAATCGTcgtaattcatttatttctgttcaAAGGCTGTTCATATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279419 True 956 lncRNA 0.34 2 16801936 16802937

Neighbor

gene id symbol gene type direction distance location
LOC103042614 LOC106936709 coding downstream 9406 16788501 ~ 16792530 (-)
trmt12 NA coding downstream 20701 16776472 ~ 16781235 (-)
sytl4 sytl4 coding downstream 28629 16747192 ~ 16773307 (-)
tspan6 tspan6 coding downstream 75597 16720472 ~ 16726339 (-)
LOC103041961 LOC108427811 coding downstream 86562 16713032 ~ 16715374 (-)
clint1 LOC108427862 coding upstream 584 16803521 ~ 16835499 (-)
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding upstream 150887 16953824 ~ 17199398 (-)
LOC103024939 ebf1,ebf1a coding upstream 396536 17199473 ~ 17246825 (-)
LOC103041682 NA coding upstream 508996 17311933 ~ 17319469 (-)
sh3tc2 sh3tc2 coding upstream 757322 17560259 ~ 17597003 (-)
G206007 NA non-coding downstream 3220 16793056 ~ 16798716 (-)
G206004 NA non-coding downstream 14548 16786677 ~ 16787388 (-)
G206006 rnaseh2c non-coding downstream 16878 16782126 ~ 16785058 (-)
G206002 NA non-coding downstream 26232 16750822 ~ 16775704 (-)
G205997 NA non-coding downstream 56357 16745220 ~ 16745579 (-)
G206017 NA non-coding upstream 126851 16929788 ~ 16930144 (-)
G206018 NA non-coding upstream 127825 16930762 ~ 16931351 (-)
G206029 NA non-coding upstream 191582 16994519 ~ 16996459 (-)
G206099 NA non-coding upstream 347572 17150509 ~ 17151049 (-)
G206142 NA non-coding upstream 475882 17278819 ~ 17279196 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 436289 16203937 ~ 16365647 (-)
G205670 NA other downstream 969842 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 1234301 15407944 ~ 15567635 (-)
G205640 NA other downstream 1256314 15543917 ~ 15545622 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 2823486 13974677 ~ 13978450 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 456849 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 1041029 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 1236738 18039675 ~ 18041939 (-)
G206575 NA other upstream 2035432 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 2234757 19037694 ~ 19127726 (-)

Expression


Co-expression Network