LOC103041988 (rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095)


Basic Information

Item Value
gene id LOC103041988
gene name rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17259786 ~ 17300993 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU279578
GAAGGAGGAGGGATGAAGTGATCGGGATGCCTCTCGCCCGCGCGCGCCGCCCGCTGCAGTCCTCCGCCAGCATGGATCCCCGCCGGCCCAGTAGCGGTTCCGAAGCCTAGACCGGAGCAGCCGCGAGACCCCCGCTTCTgtcaGTTCTGGGCTGGTGTGAAGCAGAGGCCGTGTGCTGTGTGCGTTTGTGGCGGGAGAGAGGCGCGATGGCGGTGAAGGAACGGATGGAGGCCGTGCTGAACGTGGGCCTGAGGGTGCCCAGCATCATGCTGCTGGAGGTGCTGTACCGCTGGGACGTCAGCTCTTTCTTCCAGAAGATCCAGAGGAGCAGCCTCAACAACAACCCCCTCTTCCAGTACAAGTACCTGGCCCTCTACCTGCACTACGTGGgtTATATCCTGAGTCTGATTCTGCTGACCCTTCCCAGACAGCGGCTGGTGCAGCTTTACCTGTATGTCCTCACTGCTCTGCTGCTCTTCGCTGGTCACCAGATCTCAAGGGATTATGTTCGTGGGGAGCTGGAGTCGGGGTACGAGGGGCCGCTCTACCTGGAGCCTCTATCCATGAAACGCTTCACCACTGCACTCATCTgtcAGCTGGTGGTGTGTACCCTGTGCTCCTGTGTGATGCAGACTAAGCGGATCTGGCTCTTCTCAGCTCACCTCCTCCCTCTGGTGGCCAGGCTGTGCCTTGTTCCTCTGGAGACCATTGTGTTCGTCAATCGCTTCGCCATGATCTTCACCGGTCTGGAGGTCATCTACTTCCTGGCCACAAACCTGCTGGTGCCCTTTAACCTGGCAAAGACTGCGTACAGAGAACTGGCACAGGTAGTGGAGGTGTACGGACTGCTGGCTCTGGGAATGTCTCTGTGGAATCACCTGGTTCTGCCGGTTCTCTTCATGAGCTTCTGGCTGGTTCTGTTCGCCCTGCAAATCTACACCTACTTCAGCACCCGGGATCAGCCCACGTCCAGAGAGAGGctgctcttcctcttcctcaccaG
>XM_022684330.1
GGTGCTCGGGCTGTGTGAGTGTAATGGCTGCGGGATGAAGGAGGAGGGATGAAGTGATCGGGATGCCTCTCGCCCGCGCGCGCCGCCCGCTGCAGTCCTCCGCCAGCATGGATCCCCGCCGGCCCAGTAGCGGTTCCGAAGCCTAGACCGGAGCAGCCGCGAGACCCCCGCTTCTgtcaGTTCTGGGCTGGTGTGAAGCAGAGGCCGTGTGCTGTGTGCGTTTGTGGCGGGAGAGAGGCGCGATGGCGGTGAAGGAACGGATGGAGGCCGTGCTGAACGTGGGCCTGAGGGTGCCCAGCATCATGCTGCTGGAGGTGCTGTACCGCTGGGACGTCAGCTCTTTCTTCCAGAAGATCCAGAGGAGCAGCCTCAACAACAACCCCCTCTTCCAGTACAAGTACCTGGCCCTCTACCTGCACTACGTGGgtTATATCCTGAGTCTGATTCTGCTGACCCTTCCCAGACAGCGGCTGGTGCAGCTTTACCTGTATGTCCTCACTGCTCTGCTGCTCTTCGCTGGTCACCAGATCTCAAGGGATTATGTTCGTGGGGAGCTGGAGTCGGGGTACGAGGGGCCGCTCTACCTGGAGCCTCTATCCATGAAACGCTTCACCACTGCACTCATCTgtcAGCTGGTGGTGTGTACCCTGTGCTCCTGTGTGATGCAGACTAAGCGGATCTGGCTCTTCTCAGCTCACCTCCTCCCTCTGGTGGCCAGGCTGTGCCTTGTTCCTCTGGAGACCATTGTGTTCGTCAATCGCTTCGCCATGATCTTCACCGGTCTGGAGGTCATCTACTTCCTGGCCACAAACCTGCTGGTGCCCTTTAACCTGGCAAAGACTGCGTACAGAGAACTGGCACAGGTAGTGGAGGTGTACGGACTGCTGGCTCTGGGAATGTCTCTGTGGAATCACCTGGTTCTGCCGGTTCTCTTCATGAGCTTCTGGCTGGTTCTGTTCGCCCTGCAAATCTACACCTACTTCAGCACCCGGGATCAGCCCACGTCCAGAGAGAGGctgctcttcctcttcctcaccaGGTGgggAATGACTGAGGGAATTACGCTGTTGATCCTGGCGGTTCAGACGGGTCTGATTGAGCTTCAGGTCATCCACAGAGCCTTCCTCCTCAGCATCATCCTCTTCATCGTCGTAGCTTCCATTCTTCAGTCCATGCTGGAGATCGCTGACCCCATAGTGCTGGCACTGGGGGCCTCCAGAGACAAgAGTTTATGGAAGCACTTCCGGGCGGTCAGCCTGTGTCTGTTCCTGCTGGTGTTCCCGGCGTACATGTCCTATATGATCTGCCAGTTCTTCCACATGGACTTCTGGCTCCTCATCATCATCTCCTCCAGCATCCTCACCTCTCTACAgGTGTTGGGTACGCTGCTGATCTACGTGCTCTTCATGGTGGAGGAGTTCCAGAAGGCTCCGGTGGAGAACATGGACGATGTGATTTACTGTGTGAACGGGACGTACAGGCTGCTGGAGTTCCTGGTGGCGCTGTGTGTGGTGGCGTACGGCGTGTCGGAGACGGTGTTTGGCGAGTGGACGGTGATGGGCTCCACCATCGTTCTGGTTCACTCCTATTATAACGTGTGGCTCCGGGCTCAGCTGGGCTGGCAGAGCTTCCTCCTGCGGCGAGACGCCGTCAACAAGATCAAGAGTCTGCCCACCGCCTCCCAcctgcagctccagcagcacaacGACATCTGCTCCATCTGCtaccaggaCATGAGCTCAGCTGTGATCACGCCCTGCAGCCACTTCTTCCACGCCAACTGCCTGAAGAAGTGGCTCTACGTTCAGGAGACGTGCCCTCTGTGCCACAGTCAGCTGAAGGGCTCGCCCATGTCCAGCTCTGCAGCTCAGGAGCCGGAGGGAGGCCTGGACGTGTCCCAGGAGCCTGATGCCAGCCTACCGCAGCCTGATGCCAGCCTACCAGAGCCTGATgccagtctaccagagcctgatGCCAGCCTACCGCAGCCTGATGCCAGCCTACCGCAGCCTGATgccagtctaccagagcctgatGCCAGCCTACCAGAGCCTGATGCCAGCCTACCACAGCCTGATGCCAGCCTACCGCAGCCTGATgccagtctaccagagcctgatGCCAGCCTACCACAGCCTGAGGCCAAGGCAGAGGCATCTAGTCAGATCTCAGCCTCCGAGTGCCCAGCTGAGGAGGAGGTTGGCGAGACGGGGGATGTCCTGGTACCTCCATCTGACAGTGGGCACCCCCCCTCGCCCACTAGGTCTATGGGGTCCCTGGCGGGCACTGGGTAATGCCCTCCTGCTACTTTTAGGTCTTCTGACCAATCCCTGAGCCACATCCTGTGATGTCACACTCACCTTACGCAACGAAAGTGTCTGAATCACGTCTGAAAACGGGCATCAGTGGGTAGCTGTAGTGTTACCCACTTCCTGTGCGTGTTTTGTATCTCTTGCTGTAGGAGCTGTATGCCCATCAGACACCTTTACAATCAACCACATTAACCCATTCACTCCCTGGCACCCCCTGGCACCTCCTGGCATCCCTGGCATGTCCTGGCATCAGACAAAAACTGGCATTTTTGTCTTTAAATGTGCACAACGTTTCTCAGCTGCTTCCATCTTCAACTTTCAACAGTCCATTCCCGTGCATCACAGAGGCATTTCATGCCCGCTTTAATGGGTTATGCCAATGCCGATGCCAACCAAGCATAATGAGGGAGCGTTTAATGAGGAAACATTTAATGGAACGTTTAATGGAACATTAAACCCCCATACTGTATGTGCTCACCAGCTGCACCACCTCCCACCATTTAACCACCATGCCAACCTTCACACCATCCCCTAAATACCCACCAAAACaccccccatacacacacacccacacacacacctacacacacccaTAAGACTGCAAAACTGAGTGGTTAAGAGCTGCTTACCAACCTGAATGTGATGATCATCATGTGACCCTTAGAGACAGCGCCAGCACGTATTCGTTATACGCTAATCGCTAATCGCTAGCACGCTTTCAGCTTTAAATATCCTCCAATAGCAGCAGTAGCCagacctttttgtttttttattcccagctattattaatattcatttattttaattatatatgtatatgtgtatataggcctgtcacaacaaCCATATATTGATTAAAATCTCTATTTTGTtttgaaaatgataaaaaaatgataaaaaatatcttTTCCACATAATTTTATGTTAGTAATGATACAGTTCGATGATGATgtcaaatattctaaaaagCATAACAATGCatgcacatttttactttattatctgTAGTAATatagacatgttttttttcttttataattaa

Function

symbol description
rnf145a Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF145 (ring finger protein 145).
rnf145 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: RING finger protein 145 isoform X2

GO: NA

KEGG:

id description
K23789 RNF145; E3 ubiquitin-protein ligase RNF145

RNA

RNA id representative length rna type GC content exon number start site end site
TU279578 False 1003 TUCP 0.59 6 17271247 17300957
XM_022684330.1 True 3354 mRNA 0.53 10 17259786 17300993

Neighbor

gene id symbol gene type direction distance location
LOC103024939 ebf1,ebf1a coding downstream 12961 17199473 ~ 17246825 (-)
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding downstream 60388 16953824 ~ 17199398 (-)
clint1 LOC108427862 coding downstream 424287 16803521 ~ 16835499 (-)
LOC103042614 LOC106936709 coding downstream 467256 16788501 ~ 16792530 (-)
trmt12 NA coding downstream 478551 16776472 ~ 16781235 (-)
LOC103041682 NA coding upstream 10940 17311933 ~ 17319469 (-)
sh3tc2 sh3tc2 coding upstream 259266 17560259 ~ 17597003 (-)
LOC103035473 gabrp,LOC108427849,LOC107752068,LOC107664365 coding upstream 552679 17853672 ~ 17865149 (-)
prelid1 prelid1,prelid1a,LOC107551005,LOC107706737,LOC107660432,LOC107558055,LOC107712305 coding upstream 585299 17886292 ~ 17890574 (-)
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding upstream 590875 17891868 ~ 17898561 (-)
G206099 NA non-coding downstream 108737 17150509 ~ 17151049 (-)
G206029 NA non-coding downstream 263327 16994519 ~ 16996459 (-)
G206018 NA non-coding downstream 328435 16930762 ~ 16931351 (-)
G206017 NA non-coding downstream 329642 16929788 ~ 16930144 (-)
G206000 NA non-coding downstream 456849 16801936 ~ 16802937 (-)
G206149 NA non-coding upstream 35948 17336941 ~ 17337141 (-)
G206154 NA non-coding upstream 55120 17356113 ~ 17356466 (-)
G206164 NA non-coding upstream 119935 17420928 ~ 17421193 (-)
G206172 NA non-coding upstream 149339 17450332 ~ 17450645 (-)
G206203 NA non-coding upstream 154286 17455279 ~ 17552141 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 894139 16203937 ~ 16365647 (-)
G205670 NA other downstream 1427692 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 1692151 15407944 ~ 15567635 (-)
G205640 NA other downstream 1714164 15543917 ~ 15545622 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other downstream 3209224 13942723 ~ 14050562 (-)
LOC103033759 NA other upstream 542973 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 738682 18039675 ~ 18041939 (-)
G206575 NA other upstream 1537376 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 1736701 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 2624038 19925031 ~ 19994802 (-)

Expression


Co-expression Network