LOC103033759


Basic Information

Item Value
gene id LOC103033759
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17843966 ~ 17852191 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU279786
ttgcaggcTCACCGCTCCCAACCTCAAATCTCGACAGAGGCTTCAGTCTGCACCTGaaCAGGTTCTGAAAACTCCTCTACACCTGAAGAGCCGTCTTGGTGGATCTGTACAGTCGGCCCGTAAAGCTTTGGGAACAGTTAACAAGATTGTGTCCACCTCAGCAGTCTCTCAGAAAGGTGAAACGCGGGTTAACCCTGTTGAAGCCCAGCAATGCAAAGCTCCTTCTCAGCCTGTTGGTGAAGATTATCCTGAAATTGAGAAGTTTTTCCCGTACAACCCCAGTGACTTCGAAGTATACAGCGTACCAGAGGAAGTCTGCCTCAGTCGCTTCTCATTGGCCGGTTTGGGGAAACAGCCGTGGCTTCCAGCTTTGCCTGAGGAGGATTTTGTTATGATGGATTCCTGTTTGCCTCCATCACCTCTTAAAATGCCTTCAGAATCTAGCAATGATGACCTGGAAGCATTCCTAGAAACAATCAACGGGCTGACTGTGGACCTACCCCCTGAGTGTGACTACTGAGgagattttagtttttattgtttacttgtgttttttcttttaattctgtTCTGTtggttttaataaatgtgtttttt
>TU279787
ttgcaggcTCACCGCTCCCAACCTCAAATCTCGACAGAGGCTTCAGTCTGCACCTGaaCAGGTTCTGAAAACTCCTCTACACCTGAAGAGCCGTCTTGGTGGATCTGTACAGTCGGCCCGTAAAGCTTTGGGAACAGTTAACAAGATTGTGTCCACCTCAGCAGTCTCTCAGAAAGCAATGCAAAGCTCCTTCTCAGCCTGTTGGTGAAGATTATCCTGAAATTGAGAAGTTTTTCCCGTACAACCCCAGTGACTTCGAAGTATACAGCGTACCAGAGGAAGTCTGCCTCAGTCGCTTCTCATTGGCCGGTTTGGGGAAACAGCCGTGGCTTCCAGCTTTGCCTGAGGAGGATTTTGTTATGATGGATTCCTGTTTGCCTCCATCACCTCTTAAAATGCCTTCAGAATCTAGCAATGATGACCTGGAAGCATTCCTAGAAACAATCAACGGGCTGACTGTGGACCTACCCCCTGAGTGTGACTACTGAGgagattttagtttttattgtttacttgtgttttttcttttaattctgtTCTGTtggttttaataaatgtgtttttt
>TU279788
CAGGGCGGCAGCACCGCAGAATAAACAGAGCTGAACACAGCGCAGCGGAAGAGCGGCggagcagcagccaatcaggagGCGAGTTGGGGTTTAAAACCGGGAAAATTGAAACCAAAACAAGTCCGTTTCTTTACAGAGAGAAACCTGACTAATCTACAGAGAGAAAACTGCGATTTATTGCGAAATTTCTGCGCTTTATCGGGGATTATCCGCTGTTTGaaCAGGTTCTGAAAACTCCTCTACACCTGAAGAGCCGTCTTGGTGGATCTGTACAGTCGGCCCGTAAAGCTTTGGGAACAGTTAACAAGATTGTGTCCACCTCAGCAGTCTCTCAGAAAGGTGAAACGCGGGTTAACCCTGTTGAAGCCCAGCAATGCAAAGCTCCTTCTCAGCCTGTTGGTGAAGATTATCCTGAAATTGAGAAGTTTTTCCCGTACAACCCCAGTGACTTCGAAGTATACAGCGTACCAGAGGAAGTCTGCCTCAGTCGCTTCTCATTGGCCGGTTTGGGGAAACAGCCGTGGCTTCCAGCTTTGCCTGAGGAGGATTTTGTTATGATGGATTCCTGTTTGCCTCCATCACCTCTTAAAATGCCTTCAGAATCTAGCAATGATGACCTGGAAGCATTCCTAGAAACAATCAACGGGCTGACTGTGGACCTACCCCCTGAGTGTGACTACTGAGgagattttagtttttattgtttacttgtgttttttcttttaattctgtTCTGTtggttttaataaatgtgtttttt
>XM_022684332.1
ATGGGttgcaggcTCACCGCTCCCAACCTCAAATCTCGACAGAGGCTTCAGTCTGCACCTGaaCAGGTTCTGAAAACTCCTCTACACCTGAAGAGCCGTCTTGGTGGATCTGTACAGTCGGCCCGTAAAGCTTTGGGAACAGTTAACAAGATTGTGTCCACCTCAGCAGTCTCTCAGAAAGGTGAAACGCGGGTTAACCCTGTTGAAGCCCAGCAATGCAAAGCTCCTTCTCAGCCTGTTGGTGAAGATTATCCTGAAATTGAGAAGTTTTTCCCGTACAACCCCAGTGACTTCGAAGTATACAGCGTACCAGAGGAAGTCTGCCTCAGTCGCTTCTCATTGGCCGGTTTGGGGAAACAGCCGTGGCTTCCAGCTTTGCCTGAGGAGGATTTTGTTATGATGGATTCCTGTTTGCCTCCATCACCTCTTAAAATGCCTTCAGAATCTAGCAATGATGACCTGGAAGCATTCCTAGAAACAATCAACGGGCTGACTGTGGACCTACCCCCTGAGTGTGACTACTGAGgagattttagtttttattgtttacttgtgttttttcttttaattctgtTCTGTtggttttaataaatgtgtttttttttaattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279786 False 597 lncRNA 0.46 5 17843974 17847846
TU279787 False 565 lncRNA 0.45 5 17843974 17847846
TU279788 True 760 lncRNA 0.46 5 17843974 17852191
XM_022684332.1 False 610 mRNA 0.46 6 17843966 17850998

Neighbor

gene id symbol gene type direction distance location
sh3tc2 sh3tc2 coding downstream 246963 17560259 ~ 17597003 (-)
LOC103041682 NA coding downstream 524497 17311933 ~ 17319469 (-)
LOC103024939 ebf1,ebf1a coding downstream 597141 17199473 ~ 17246825 (-)
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding downstream 644568 16953824 ~ 17199398 (-)
clint1 LOC108427862 coding downstream 1008467 16803521 ~ 16835499 (-)
LOC103035473 gabrp,LOC108427849,LOC107752068,LOC107664365 coding upstream 1481 17853672 ~ 17865149 (-)
prelid1 prelid1,prelid1a,LOC107551005,LOC107706737,LOC107660432,LOC107558055,LOC107712305 coding upstream 34101 17886292 ~ 17890574 (-)
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding upstream 39677 17891868 ~ 17898561 (-)
ergic1 ergic1,LOC107679115,LOC107660430 coding upstream 107769 17959960 ~ 17984069 (-)
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding upstream 223864 18076055 ~ 18079482 (-)
G206275 NA non-coding downstream 423 17843285 ~ 17843543 (-)
G206218 NA non-coding downstream 265282 17578285 ~ 17578684 (-)
G206203 NA non-coding downstream 291825 17455279 ~ 17552141 (-)
G206172 NA non-coding downstream 393321 17450332 ~ 17450645 (-)
G206164 NA non-coding downstream 422773 17420928 ~ 17421193 (-)
G206271 LOC108436176 non-coding upstream 49688 17901879 ~ 17902564 (-)
G206348 NA non-coding upstream 181949 18034140 ~ 18039149 (-)
LOC111195818 NA non-coding upstream 261527 18113718 ~ 18122487 (-)
LOC103029928 NA non-coding upstream 331236 18183427 ~ 18186787 (-)
G206434 NA non-coding upstream 418272 18270463 ~ 18274321 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 542973 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1478319 16203937 ~ 16365647 (-)
G205670 NA other downstream 2011872 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 2276331 15407944 ~ 15567635 (-)
G205640 NA other downstream 2298344 15543917 ~ 15545622 (-)
LOC111195732 NA other upstream 187484 18039675 ~ 18041939 (-)
G206575 NA other upstream 986178 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 1185503 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 2072840 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 2105286 19957477 ~ 19968031 (-)

Expression


Co-expression Network