G206443


Basic Information

Item Value
gene id G206443
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18279811 ~ 18280130 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280093
gtcaccggacctgaacccaatccagatccaggtttggggtgagctggagcacagagtgaagaagacaaaggagcaacaagtgctaataaacacctctgggaactccttccttccttcaagactgttggaaaacttttcattttaggtggccacctcttaaatgaagctcattgagagaatgatgccaagagtgtgtaaagcagtaatcagagcaaaggggggcttttattttgaagaaactagaatataaaacatgtttttttttttcagttattttacctttttttattaactacataaaactccacgtgtgttcattc

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU280093 True 320 lncRNA 0.39 1 18279811 18280130

Neighbor

gene id symbol gene type direction distance location
LOC103044938 NA coding downstream 70925 18191791 ~ 18208886 (-)
slbp NA coding downstream 99289 18176707 ~ 18180522 (-)
ccdc142 NA coding downstream 103696 18165988 ~ 18176115 (-)
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding downstream 200329 18076055 ~ 18079482 (-)
ergic1 ergic1,LOC107679115,LOC107660430 coding downstream 295742 17959960 ~ 17984069 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding upstream 503 18280633 ~ 18282899 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding upstream 57562 18337692 ~ 18343003 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding upstream 76859 18356989 ~ 18370024 (-)
LOC103026001 NA coding upstream 99664 18379794 ~ 18385052 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding upstream 144628 18424758 ~ 18636999 (-)
G206435 acrc,LOC108268437,LOC102779592,LOC100690020 non-coding downstream 1270 18276257 ~ 18278541 (-)
G206434 NA non-coding downstream 5490 18270463 ~ 18274321 (-)
LOC103029928 NA non-coding downstream 93024 18183427 ~ 18186787 (-)
LOC111195818 NA non-coding downstream 157324 18113718 ~ 18122487 (-)
G206348 NA non-coding downstream 240662 18034140 ~ 18039149 (-)
G206444 nsdhl non-coding upstream 3763 18283893 ~ 18286260 (-)
G206446 nsdhl non-coding upstream 8845 18288975 ~ 18302819 (-)
G206460 NA non-coding upstream 68625 18348755 ~ 18349791 (-)
G206457 NA non-coding upstream 70932 18351062 ~ 18353411 (-)
G206462 NA non-coding upstream 95907 18376037 ~ 18376238 (-)
LOC111195732 NA other downstream 237872 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 427620 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 978818 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1914164 16203937 ~ 16365647 (-)
G205670 NA other downstream 2447717 15831650 ~ 15832094 (-)
G206575 NA other upstream 558239 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 757564 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1644901 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1677347 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1826967 20107097 ~ 20274905 (-)

Expression


Co-expression Network