G206444 (nsdhl)


Basic Information

Item Value
gene id G206444
gene name nsdhl
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18283893 ~ 18286260 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280094
CAGGAACCCTTTTTCTTTATTGCAGGCCTGCAGGACgagCTTCTCCTGTTGGATTTTGGTCTGTGTATAATAATCGATAGGCTTTTTTGCGTAAGGCAGATCCTCCTCTCCATTTTTGATGTCGGTTCCCTCAAACACAACACTGGCACTGCTGGTTAAAACCAGTTTCTGTACTCCGGCTTCTTGACAGGCTTGGATGACTGTGCGAGTTCCCTCAACATTCACCCTCTGGAATAAAGCCTGATCATCACTAGAAGGTGCAGGAGAGGCACAGTGAAACACTAACGATACATCCCTCAGAGCCACGAGTAAatcCTGTTTGTTACAGAGATCTCCTTGATGAAACGTGACTCCAGGAAGCTCATAGCTCTGTCTGATATCAAACACAGACACTGAGTAGCCCTTCTCCACCAGCTTCTCAACAAGATGCCTCCCTAAAAACCCAGATCCTCCAACCACAGCACACCTCTTACTGCTCGAGCGGATCCGGGTCGCCATgcctgatttattttctttgatcGGTGGATTAAATACAGCCTGAACTCCTCTCACCTGAACCCGCGAGACTACAGAATCTATATCAACACGGTC
>TU280095
CCTGTACTCCGGCTTCTTGACAGGCTTGGATGACTGTGCGAGTTCCCTCAACATTCACCCTCTGGAATAAAGCCTGATCATCACTAGAAGGTGCAGGAGAGGCACAGTGAAACACTAACGATACATCCCTCAGAGCCACGAGTAAatcCTGTTTGTTACAGAGATCTCCTTGATGAAACGTGACTCCAGGAAGCTCATAGCTCTGTCTGATATCAAACACAGACACTGAGTAGCCCTTCTCCACCAGCTTCTCAACAAGATGCCTCCCTAAAAACCCAGATCCTCCAACCACAGCACACCTCTTACTGCTCGAGCGGATCCGGGTCGCCATgcctgatttattttctttgatcGGTGGATTAAATACAGCCTGAACTCCTCTCACCTGAACCCGCGAGACTACAGAATCTATATCAACACGGTC

Function

symbol description
nsdhl Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Acts upstream of or within response to yeast. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in CHILD syndrome and CK syndrome. Orthologous to human NSDHL (NAD(P) dependent steroid dehydrogenase-like).

NR:

description
sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280094 True 591 lncRNA 0.48 6 18283893 18286260
TU280095 False 424 lncRNA 0.49 4 18283893 18285783

Neighbor

gene id symbol gene type direction distance location
LOC103028142 cetn2,LOC108436166,LOC102228171 coding downstream 994 18280633 ~ 18282899 (-)
LOC103044938 NA coding downstream 75007 18191791 ~ 18208886 (-)
slbp NA coding downstream 103371 18176707 ~ 18180522 (-)
ccdc142 NA coding downstream 107778 18165988 ~ 18176115 (-)
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding downstream 204411 18076055 ~ 18079482 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding upstream 51432 18337692 ~ 18343003 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding upstream 70729 18356989 ~ 18370024 (-)
LOC103026001 NA coding upstream 93534 18379794 ~ 18385052 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding upstream 138498 18424758 ~ 18636999 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding upstream 972338 19258598 ~ 19268334 (-)
G206443 NA non-coding downstream 3763 18279811 ~ 18280130 (-)
G206435 acrc,LOC108268437,LOC102779592,LOC100690020 non-coding downstream 5352 18276257 ~ 18278541 (-)
G206434 NA non-coding downstream 9572 18270463 ~ 18274321 (-)
LOC103029928 NA non-coding downstream 97106 18183427 ~ 18186787 (-)
LOC111195818 NA non-coding downstream 161406 18113718 ~ 18122487 (-)
G206446 nsdhl non-coding upstream 2715 18288975 ~ 18302819 (-)
G206460 NA non-coding upstream 62495 18348755 ~ 18349791 (-)
G206457 NA non-coding upstream 64802 18351062 ~ 18353411 (-)
G206462 NA non-coding upstream 89777 18376037 ~ 18376238 (-)
G206466 NA non-coding upstream 114433 18400693 ~ 18400913 (-)
LOC111195732 NA other downstream 241954 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 431702 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 982900 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1918246 16203937 ~ 16365647 (-)
G205670 NA other downstream 2451799 15831650 ~ 15832094 (-)
G206575 NA other upstream 552109 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 751434 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1638771 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1671217 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1820837 20107097 ~ 20274905 (-)

Expression


Co-expression Network