G206583


Basic Information

Item Value
gene id G206583
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18923815 ~ 19087671 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280298
GTTTCTAAAgagattcattattttaaaaaagcagagaaagatggagagagagaaagagagtgttttCTATACaggttttatttacaaaatgtattaaaattctTTGTACAAGGCCTCGCTAATGAGGTTTCAGTAAATTATAGCCACGCATgcacttctttcttttgtttatcaCGAGGATTCAGCCTGGCGAGTTTCTCCGGGCCGAGGTGCAGAAACAGGGAGGGAGAAACGGGGTGAAATCAGGTCAAAATCCAAGACTGACGCTCTGCTTTTCTGCTCTTCTGCTCTTCTAGGATTGGATGGAAGTTGCAGGGCTCGATAGGCAATCACAGATTTTTCACATGCagatttatttcaaataaaaaaagaaaaaagaaaaagaatagagagagagaaagagagagagagagaggtggggatTTCAGTCACTCCACTCTGAATCCTGCTAGAAATCTTcatcacatttaaacaaaatgtacatTTCTTCATAGTTCTTTATCTCCCTTTTCttttaaaactcttttaaaagctttttatttgctatataaaactatctatctctctctcctcagggTTCAGGACCGAGATCTTTCCTAAATCCTACAGAATCACAGTTTTCTCTTTAGTTCGTTTGTTTTTTCTCAAAGTGAACAGAAAGTGTTTCAGCAAAATGTAAATGTGCTAAGCTTTAAGACGACCCCTGTTTTCACCTTGTGTACGTAAAATCTATTCGTAGTTTTTGttataaatgctattttttatttttttactaagtaATTCATCCAACGCTAaaatgctctcaaactaaaaaACGAAAAAAGTTAAAAACCCAAAGCTTTTGTTTAAGTGTGCGACAGAACCGGGAGGAAACACTACGTTTTTAACAGCCATATCCTCTTTTATTTTTACGATGGATTTTTTGATTGCGGTCTATCTACATTTAGATGATCCTGTTCACGTGTATCGTATAGCTTCAAGTTTCTTGTACAGTAGGCTCTGagaactacaataaaaaaaagtaagattgTAAGTAAGCGAATGCAAATACTGTAGATACGCTTTACTTTACTGTCTCTGAAAAGGTTTTAATACTAGCAGGTGAATCTTGTGtaacatctgaaacatctgattGCAGCTTAACGCGTGTTAAGTGCTCACATCGCAATacgtctctttttttttgtatatttatttgtattttttggtcatatTAATAATACAGAATGTGCATTTTTCAGTTACCGACTGCCAGAATGTATTATATAACTAGAGCCTGTATGGTTGAGGCTGAGGATGCCAGATTTCGGAGAAATCCGCGGCACCGAACggaaaaataaacaatgacGACTACTCAAGTAACAGCATATAATCAGACTCTCTCACATTTAAATGATTTCTAGTTGAAAGAATTTAAAATTTGATAAATTAATGCTTTGATTGGATGGCTGTGTGATTGTGAAAGCAAATTTACAGTTTAATGAAATACAagctttttcctctttttttttttttttttttaaagttttttcttttgtagATTTGCTTGACAACCAAGTCCAGCAGCGCTCAGACGCCGCGAACACTGACTGTCCCCAGAACAGCTTTCAGTTTTCAGTCCGTCTGGCTCTTCAGAAATGTGCTAAAAGATTGCAAAGTGATGGCTTTGTTTCTCGGTTTTCATGGAGTTACGTTCTAGAGTTCAAGAGTTTATTCACAGATGACGATGGCATTCGCTCGCGCGTcgcttgtgtttgtgtggagtgtgtgtggagtgtgtgtagagtgtgtgt
>TU280299
ataaaaaaaataagattgTAAGTAAGCGAATGCAAATACTGTAGATACGCTTTACTTTACTGTCTCTGAAAAGGTTTTAATACTAGCAGGTGAATCTTGTGtaacatctgaaacatctgattGCAGCTTAACGCGTGTTAAGTGCTCACATCGCAATacgtctctttttttttgtatatttatttgtattttttggtcatatTAATAATACAGAATGTGCATTTTTCAGTTACCGACTGCCAGAATGTATTATATAACTAGAGCCTGTATGGTTGAGGCTGAGGATGCCAGATTTCGGAGAAATCCGCGGCACCGAACggaaaaataaacaatgacGACTACTCAAGTAACAGCATATAATCAGACTCTCTCACATTTAAATGATTTCTAGTTGAAAGAATTTAAAATTTGATAAATTAATGCTTTGATTGGATGGCTGTGTGATTGTGAAAGCAAATTTACAGTTTAATGAAATACAagctttttcctctttttttttttttttttttaaagttttttcttttgtagATTTGCTTGACAACCAAGTCCAGCAGCGCTCAGACGCCGCGAACACTGACTGTCCCCAGAACAGCTTTCAGTTTTCAGTCCGTCTGGCTCTTCAGAAATGTGCTAAAAGATTGCAAAGTGATGGCTTTGTTTCTCGGTTTTCATGGAGTTACGTTCTAGAGTTCAAGAGTTTATTCACAGATGACGATGGCATTCGCTCGCGCGTcgcttgtgtttgtgtggagtgtgtgtggagtgtgtgtagagtgtgtgt
>TU280300
GTTTCTAAAgagattcattattttaaaaaagcagagaaagatggagagagagaaagagagtgttttCTATACaggttttatttacaaaatgtattaaaattctTTGTACAAGGCCTCGCTAATGAGGTTTCAGTAAATTATAGCCACGCATgcacttctttcttttgtttatcaCGAGGATTCAGCCTGGCGAGTTTCTCCGGGCCGAGGTGCAGAAACAGGGAGGGAGAAACGGGGTGAAATCAGGTCAAAATCCAAGACTGACGCTCTGCTTTTCTGCTCTTCTGCTCTTCTAGGATTGGATGGAAGTTGCAGGGCTCGATAGGCAATCACAGATTTTTCACATGCagatttatttcaaataaaaaaagaaaaaagaaaaagaatagagagagagaaagagagagagagagagagagggagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280298 True 1793 lncRNA 0.36 2 18956457 19034724
TU280299 False 781 lncRNA 0.37 3 18956457 19087671
TU280300 False 435 lncRNA 0.40 2 18923815 19034724

Neighbor

gene id symbol gene type direction distance location
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding downstream 286816 18424758 ~ 18636999 (-)
LOC103026001 NA coding downstream 538763 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 553791 18356989 ~ 18370024 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding downstream 580812 18337692 ~ 18343003 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding downstream 640916 18280633 ~ 18282899 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding upstream 170927 19258598 ~ 19268334 (-)
LOC103038011 uprt,LOC108440089,LOC108443770 coding upstream 263230 19350901 ~ 19359251 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 488826 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 506633 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 518354 19606025 ~ 19623243 (-)
G206570 NA non-coding downstream 110511 18812986 ~ 18813304 (-)
G206569 NA non-coding downstream 117135 18806439 ~ 18806680 (-)
G206467 NA non-coding downstream 517070 18406536 ~ 18406745 (-)
G206466 NA non-coding downstream 522902 18400693 ~ 18400913 (-)
G206462 NA non-coding downstream 547577 18376037 ~ 18376238 (-)
G206595 magt1,LOC107566011,LOC106604089,LOC106592046,LOC107689142 non-coding upstream 46927 19134598 ~ 19137647 (-)
G206597 NA non-coding upstream 72734 19160405 ~ 19170639 (-)
G206613 NA non-coding upstream 168873 19256544 ~ 19257031 (-)
G206629 abcb7 non-coding upstream 316539 19404210 ~ 19407338 (-)
G206640 NA non-coding upstream 407761 19495432 ~ 19511159 (-)
G206575 NA other downstream 84899 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 881876 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 1071624 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 1622822 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 2558168 16203937 ~ 16365647 (-)
LOC103046671 NA other upstream 837360 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 869806 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1019426 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 1376032 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 1589782 20677453 ~ 20782984 (-)

Expression


Co-expression Network