G206593


Basic Information

Item Value
gene id G206593
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19063499 ~ 19139457 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280319
agtttctttgattttcccaaattaaaaacctctataatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaacagggttattccaccaaatattgatttctgaactcttaaaactttatatgaacctgttttttgttgttgttatttcagtcatttctcattttctgtaaataaatgctctaaatgacaatgtttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcagaatcagagaaactgattcagaaactgaagtggtcttaatttattttccagagctgtatacagtataGATATCAGGATTGTGAAACAATGAAGCAGATCAGTCATCATTATGAGGAGGTGGTTGTCAGGGGGTTCCCTTGTGGCTCCCCCTCCAGGTTAACCCCATTACTGACACAGGCAGTTGAGATTTATCCTTTTCCACTTCTGAACGGTGAAAAGCACATGCTCTGTTACGTAGTAGATGAAATTTACACCTCTAAAGATATTCCTGAGAGCAGGTAAAGCTGGTAAGGACTGGTAATATTCTGCGCAGTGGGGCAGATTACGGTGCGCGAGAGCGTGGAGAGGTGCGTAACGTTCTCACCTTCACTCTCGCGCTACAAAATCAATCCCAGTCAATCCGTTGGAGAGACGGGCGAGGATGGCAGGTTAGCGTTTCGCTGTAAGAGCCTGTGCTTCGGCTCTTAATGAATGCCATTAATTCTCTTGTTGGACTCGTTGGCGTCCCCCGGCCTCTGTCCTGTCACGCCGAGGTGATCTTATCAGTTATCAATCGTAATGAGCTTTCTCCCGCTTTCTCGCCTCTCGCCAGAATAAGGTTTAGGAGTCTCCGAATCAGGCGTTCCCCGGCCGTTCCTGCGACCGCCTGTCTCTCCCGTCCCCAGTAATGACACACTTTGTTTTCCAGCGGCTCGCGGCTGTTAATATTTCACATGTCAACGAGGGGCGGTAATTGTAAGAGGAGTGGAAATTGTCATTCTCTGATTGGTATTTGTTCGTGGCTCCTAAGGTTAATGAGGAAGTGACATCTGTTAGCTTGGGTTAGTGTTACTCTTCTCCTCGTTCGTATGTCTCTTCTTCTGCGCTCGCCAGCTTTCAGACAGACTGTGGGAGATAATTGAGGTCAGTAATGCTCTTCAGATTGCCACCAGTGGGATTTCTTGCCACGCCCCCTCTCTGACCAGGAGGACGGGGTCCTTGAACTCCTGGCCTTTTGTCCTGTAGAAGTACAGAGTTATCAAGAAGAACACGGCAAGTTGAGGGGGACTGCATTTAAACCAATGCTCAGATACTGAATTCTGAAAAAATtcaaatatagtaaaatatgagAGGTGCTCAATATGGACAGAAAGTGTGATGTGCGATGAAGCTTTTGGATATCCTGTTCAATAAGACCTAAATTATTGTTAAGGCTACGATCTAGGCTGCAACCTAGGCTACGGCCTAGACTATGACCTAGGCTATAATCCAGGCTATAGTGTATAGGCTGCAGTCCAGGCTATGACCTAGGCTACGCTCAAGGCTATGACCTAGGCTACGCTCAAGGCTATGACCTAGGCTACGCTCAAGGCTATGACCTAGGCTACAGTCTAGACTATGACCT
>TU280320
aactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaaactttatatgaacctgttttttgttgttgttatttcagtcatttctcattttctgtaaataaatgctctaaatgacaatgtttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcagaatcagagaaactgattcagaaactgaagtggtcttaatttattttccagagctgtatacagtataGATATCAGGATTGTGAAACAATGAAGCAGATCAGTCATCATTATGAGGAGGTGGTTGTCAGGGGGTTCCCTTGTGGCTCCCCCTCCAGGTTAACCCCATTACTGACACAGGCAGTTGAGATTTATCCTTTTCCACTTCTGAACGGTGAAAAGCACATGCTCTGTTACGTAGTAGATGAAATTTACACCTCTAAAGATATTCCTGAGAGCAGGTAAAGCTGGTAAGGACTGGTAATATTCTGCGCAGTGGGGCAGATTACGGTGCGCGAGAGCGTGGAGAGGTGCGTAACGTTCTCACCTTCACTCTCGCGCTACAAAATCAATCCCAGTCAATCCGTTGGAGAGACGGGCGAGGATGGCAGGTTAGCGTTTCGCTGTAAGAGCCTGTGCTTCGGCTCTTAATGAATGCCATTAATTCTCTTGTTGGACTCGTTGGCGTCCCCCGGCCTCTGTCCTGTCACGCCGAGGTGATCTTATCAGTTATCAATCGTAATGAGCTTTCTCCCGCTTTCTCGCCTCTCGCCAGAATAAGGTTTAGGAGTCTCCGAATCAGGCGTTCCCCGGCCGTTCCTGCGACCGCCTGTCTCTCCCGTCCCCAGTAATGACACACTTTGTTTTCCAGCGGCTCGCGGCTGTTAATATTTCACATGTCAACGAGGGGCGGTAATTGTAAGAGGAGTGGAAATTGTCATTCTCTGATTGGTATTTGTTCGTGGCTCCTAAGGTTAATGAGGAAGTGACATCTGTTAGCTTGGGTTAGTGTTACTCTTCTCCTCGTTCGTATGTCTCTTCTTCTGCGCTCGCCAGCTTTCAGACAGACTGTGGGAGATAATTGAGGTCAGTAATGCTCTTCAGATTGCCACCAGTGGGATTTCTTGCCACGCCCCCTCTCTGACCAGGAGGACGGGGTCCTTGAACTCCTGGCCTTTTGTCCTGTAGAAGTACAGAGTTATCAAGAAGAACACGGCAAGTTGAGGGGGACTGCATTTAAACCAATGCTCAGATACTGAATTCTGAAAAAATtcaaatatagtaaaatatgagAGGTGCTCAATATGGACAGAAAGTGTGATGTGCGATGAAGCTTTTGGATATCCTGTTCAATAAGACCTAAATTATTGTTAAGGCTACGATCTAGGCTGCAACCTAGGCTACGGCCTAGACTATGACCTAGGCTATAATCCAGGCTATAGTGTATAGGCTGCAGTCCAGGCTATGACCTAGGCTACAGTCTAGGCTATGACCTAGGCTACAGTCTAGACTATGACCTAGGCTAGAGTCCAGGCTATAGTATAGGCTGTGCCCTAGGCTACAGTACAGGCTGTGACCTAGGCT
>TU280321
aactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaaactttatatgaacctgttttttgttgttgttatttcagtcatttctcattttctgtaaataaatgctctaaatgacaatgtttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcagaatcagagaaactgattcagaaactgaagtggtcttaatttattttccagagctgtatacagtataGATATCAGGATTGTGAAACAATGAAGCAGATCAGTCATCATTATGAGGAGGTGGTTGTCAGGGGGTTCCCTTGTGGCTCCCCCTCCAGGTTAACCCCATTACTGACACAGGCAGTTGAGATTTATCCTTTTCCACTTCTGAACGGTGAAAAGCACATGCTCTGTTACGTAGTAGATGAAATTTACACCTCTAAAGATATTCCTGAGAGCAGGTAAAGCTGGTAAGGACTGGTAATATTCTGCGCAGTGGGGCAGATTACGGTGCGCGAGAGCGTGGAGAGGTGCGTAACGTTCTCACCTTCACTCTCGCGCTACAAAATCAATCCCAGTCAATCCGTTGGAGAGACGGGCGAGGATGGCAGGTTAGCGTTTCGCTGTAAGAGCCTGTGCTTCGGCTCTTAATGAATGCCATTAATTCTCTTGTTGGACTCGTTGGCGTCCCCCGGCCTCTGTCCTGTCACGCCGAGGTGATCTTATCAGTTATCAATCGTAATGAGCTTTCTCCCGCTTTCTCGCCTCTCGCCAGAATAAGGTTTAGGAGTCTCCGAATCAGGCGTTCCCCGGCCGTTCCTGCGACCGCCTGTCTCTCCCGTCCCCAGTAATGACACACTTTGTTTTCCAGCGGCTCGCGGCTGTTAATATTTCACATGTCAACGAGGGGCGGTAATTGTAAGAGGAGTGGAAATTGTCATTCTCTGATTGGTATTTGTTCGTGGCTCCTAAGGTTAATGAGGAAGTGACATCTGTTAGCTTGGGTTAGTGTTACTCTTCTCCTCGTTCGTATGTCTCTTCTTCTGCGCTCGCCAGCTTTCAGACAGACTGTGGGAGATAATTGAGGTCAGTAATGCTCTTCAGATTGCCACCAGTGGGATTTCTTGCCACGCCCCCTCTCTGACCAGGAGGACGGGGTCCTTGAACTCCTGGCCTTTTGTCCTGTAGAAGTACAGAGTTATCAAGAAGAACACGGCAAGTTGAGGGGGACTGCATTTAAACCAATGCTCAGATACTGAATTCTGAAAAAATtcaaatatagtaaaatatgagAGGTGCTCAATATGGACAGAAAGTGTGATGTGCGATGAAGCTTTTGGATATCCTGTTCAATAAGACCTAAATTATTGTTAAGGCTACGATCTAGGCTGCAACCTAGGCTACGGCCTAGACTATGACCTAGGCTATAATCCAGGCTATAGTGTATAGGCTGCAGTCCAGGCTATGACCTAGGCTACAGTCTAGGCTATGACCTAGGCTACAGTCTAGACTATGACCTAGGCTAGAGTCCAGGCTATAGTATAGGCTGTGCCCTAGGCTACAGTACAGGCTGTGACCTAGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280319 True 1784 lncRNA 0.44 2 19063708 19072082
TU280320 False 1627 lncRNA 0.45 4 19063499 19139457
TU280321 False 1627 lncRNA 0.45 4 19063499 19139457

Neighbor

gene id symbol gene type direction distance location
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding downstream 426500 18424758 ~ 18636999 (-)
LOC103026001 NA coding downstream 678447 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 693475 18356989 ~ 18370024 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding downstream 720496 18337692 ~ 18343003 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding downstream 780600 18280633 ~ 18282899 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding upstream 119141 19258598 ~ 19268334 (-)
LOC103038011 uprt,LOC108440089,LOC108443770 coding upstream 211444 19350901 ~ 19359251 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 437040 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 454847 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 466568 19606025 ~ 19623243 (-)
G206589 NA non-coding downstream 38118 19022154 ~ 19025381 (-)
G206585 NA non-coding downstream 41643 19013235 ~ 19021856 (-)
G206586 NA non-coding downstream 43592 19015822 ~ 19019907 (-)
G206584 LOC107566009,LOC107568987,LOC107689141 non-coding downstream 77778 18971519 ~ 18985721 (-)
G206570 NA non-coding downstream 250195 18812986 ~ 18813304 (-)
G206597 NA non-coding upstream 20948 19160405 ~ 19170639 (-)
G206613 NA non-coding upstream 117087 19256544 ~ 19257031 (-)
G206629 abcb7 non-coding upstream 264753 19404210 ~ 19407338 (-)
G206640 NA non-coding upstream 355975 19495432 ~ 19511159 (-)
G206634 NA non-coding upstream 374660 19514117 ~ 19516119 (-)
G206575 NA other downstream 224583 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1021560 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 1211308 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 1762506 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 2697852 16203937 ~ 16365647 (-)
LOC103046671 NA other upstream 785574 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 818020 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 967640 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 1324246 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 1537996 20677453 ~ 20782984 (-)

Expression


Co-expression Network