G206629 (abcb7)


Basic Information

Item Value
gene id G206629
gene name abcb7
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19404210 ~ 19407338 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280374
atcACATTCAATTATGTAATCTGGTCCATAAAAATATCAACATCCCGACAGGTTTtttcaggttttagattttattttgttttttgtcagcAGTCTCAGTCTCTGCTgatatttattgttttgataCAAATGAGTGTTTTTGTTAAAGAGCAGATCTCACGATCATGAATTAGCGACAAATAATATTAGCTCAAGGTGCTGTTAAAGTTTAATCAATACACCAAATATATAAAGTGTTCCTGTTTCTGccagtaaatacatttttcacttACAAAAAGCCATAGGACACATTTTCTCCTGTACATTACGACTCGTCAGGAGCCATCGAGTCATTTTGAGTCATATTAATATGTACATTTCCATAATAAAAACAGCTACCTAGACTTCTAAATcacatggaaaaaatatatataatatataataatttaaaactagtttaaaCACCTTAATACATGTGTGTGAACTCCCAGCCATGCTCCTGGAGCAGTGTTACTCTTTATACtgcagtgttacagtgtttttaatctctgcattaaaacatataataatctGTACGTCCAATTAATATGCTAATAATTGAGCACCTCGGCTATGTATAaagctatgttcagactgccagcacaaatctgatttttatatTGCATTTAGACTGATTTTTGATTGGTCTGGACAGgcagaaaccacataaaaaaaacagattttaacaAATCAGCTCTAAACCAAATTTGGAGAATGTTTGAAATGTGATTTACAGattttaatttgtctttttttgtgcaTCAATCACAACCTCACCACTTACAGCCTgacaaacctcaaatctggtaAATCCAAGATGAAGGATGCACAAAAAAGCCAAAGCCAAAGGttatttactaatttactaaAAATTTCGACACTGCAGCATCTCATGcagatatgtttatatatttgtttgtgaTGTCCCGACAGGCAAATCCAATCTTAACACTTACGCAAATTAAAAATCGAATCGGTTTACCTGCAGTTTGATCATTTAAGCTTTAAAGCAGGGAAAACACTAAACAACGTATGGATATGGTGCTCCAGGGGCAGGGCTGATTAACACTGTTCACAGAAAGGCATGTGTTCGAGAATGTGGCTGATGGATGTACAGAATGCCATGTGCCAGTTTCCAAAGAATTACCCAGCATTTTTTAACCAAGTCTctatttgctgtgtgtgtggtatacagTCGATTACTTCTATACTATAAAATCTGTAAGTAAGggggttttcacacctgtagttggtttctatggtctgaatcagttgagtttgtttatttgaagcatttatgcaccaaaatgtgcaccaataaaccaggagagcacatcgtctcctctgattggtcagagctgtatGGCGTGGGAGTAAGAAAGTAGAAGtttgtgttccagcgcgtatatctgcagtgtgaagctgctttattaCAGAACTCTGAAATGCTGCGCTTTTAAACTGCCATTTTTATCGTACATTTGGTGAGCCAGGCGatggtttaaagtgtttatttcggTACAGCGCAGATGTATACGTAGTAAATGAGGTTGCGCAGCTGCGagtagtgaatgcagcacagactgtgcgtgtaaacagcatggagcagcagcagagacagtgtttgttcatagctgtggtaatcagCTTTATCTGACTAATGTATCACATTAAACTGCGccatatcagcagtttagctcaaataaaaggagtatatttgatagctgggtcggactagatcacgttctcaccacaagagaACCGTCCAGAGGTCTCGATCTGGTTCTTTTGATCCACATCTGaatgcgattactgttttcacacctgctcaatcaaactgAACTAAGAGTACAACCAGTACAACCaaccagagtccgttttaaccGAACCAAATACTATACTCCTTCCAACTGATTTAAACAGTGAAATGTTCTCATGTAGTTGATGCAGCCAATAGAGCTTTGGTTAAGAAACGCCTGAATAATTATTTGATATAAAGAAGAGATCTGGTCACTCAACACTCCACCCAAGTCCAGGAAGACGACCAACAGACGGGTCTGTGTCCAGTCACATATTTTCAGGGTAGAGTCAGTTTGAGGCAGCACGAAGAGCATTAGATTAGATTCTTCATCTTCCAGCCGCTCTGTAGAGCAGGACTCAAGGGATGGTGTGAGAAGGCCTCAGCAGATCTGACTCTCCCCATAGAGAGCTTCAGAGAGCTTCAGAgagctcctgtgtgtgtgtatatatacagtacaggccaaaagtttggacacgccttctttt
>TU280375
atcACATTCAATTATGTAATCTGGTCCATAAAAATATCAACATCCCGACAGGTTTtttcaggttttagattttattttgttttttgtcagcAGTCTCAGTCTCTGCTgatatttattgttttgataCAAATGAGTGTTTTTGTTAAAGAGCAGATCTCACGATCATGAATTAGCGACAAATAATATTAGCTCAAGGTGCTGTTAAAGTTTAATCAATACACCAAATATATAAAGTGTTCCTGTTTCTGccagtaaatacatttttcacttACAAAAAGCCATAGGACACATTTTCTCCTGTACATTACGACTCGTCAGGAGCCATCGAGTCATTTTGAGTCATATTAATATGTACATTTCCATAATAAAAACAGCTACCTAGACTTCTAAATcacatggaaaaaatatatataatatataataatttaaaactagtttaaaCACCTTAATACATGTGTGTGAACTCCCAGCCATGCTCCTGGAGCAGTGTTACTCTTTATACtgcagtgttacagtgtttttaatctctgcattaaaacatataataatctGTACGTCCAATTAATATGCTAATAATTGAGCACCTCGGCTATGTATAaagctatgttcagactgccagcacaaatctgatttttatatTGCATTTAGACTGATTTTTGATTGGTCTGGACAGgcagaaaccacataaaaaaaacagattttaacaAATCAGCTCTAAACCAAATTTGGAGAATGTTTGAAATGTGATTTACAGattttaatttgtctttttttgtgcaTCAATCACAACCTCACCACTTACAGCCTgacaaacctcaaatctggtaAATCCAAGATGAAGGATGCACAAAAAAGCCAAAGCCAAAGGttatttactaatttactaaAAATTTCGACACTGCAGCATCTCATGcagatatgtttatatatttgtttgtgaTGTCCCGACAGGCAAATCCAATCTTAACACTTACGCAAATTAAAAATCGAATCGGTTTACCTGCAGTTTGATCATTTAAGCTTTAAAGCAGGGAAAACACTAAACAACGTATGGATATGGTGCTCCAGGGGCAGGGCTGATTAACACTGTTCACAGAAAGGCATGTGTTCGAGAATGTGGCTGATGGATGTACAGAATGCCATGTGCCAGTTTCCAAAGAATTACCCAGCATTTTTTAACCAAGTCTctatttgctgtgtgtgtggtatacagTCGATTACTTCTATACTATAAAATCTGTAAGTAAGggggttttcacacctgtagttggtttctatggtctgaatcagttgagtttgtttatttgaagcatttatgcaccaaaatgtgcaccaataaaccaggagagcacatcgtctcctctgattggtcagagctgtatGGCGTGGGAGTAAGAAAGTAGAAGtttgtgttccagcgcgtatatctgcagtgtgaagctgctttattaCAGAACTCTGAAATGCTGCGCTTTTAAACTGCCATTTTTATCGTACATTTGGTGAGCCAGGCGatggtttaaagtgtttatttcggTACAGCGCAGATGTATACGTAGTAAATGAGGTTGCGCAGCTGCGagtagtgaatgcagcacagactgtgcgtgtaaacagcatggagcagcagcagagacagtgtttgttcatagctgtggtaatcagCTTTATCTGACTAATGTATCACATTAAACTGCGccatatcagcagtttagctcaaataaaaggagtatatttgatagctgggtcggactagatcacgttctcaccacaagagaACCGTCCAGAGGTCTCGATCTGGTTCTTTTGATCCACATCTGaatgcgattactgttttcacacctgctcaatcaaactgAACTAAGAGTACAACCAGTACAACCaaccagagtccgttttaaccGAACCAAATACTATACTCCTTCCAACTGATTTAAACAGTGAAATGTTCTCATGTAGTTGATGCAGCCAATAGAGCTTTGGTTAAGAAACGCCTGAATAATTATTTGATATAAAGAAGAGATCTGGTCACTCAACACTCCACCCAAGTCCAGGAAGACGACCAACAGACGGGTCTGTGTCCAGTCACATATTTTCAGGGTAGAGTCAGTTTGAGGCAGCACGAAGAGCATTAGATTAGATTCTTCATCTTCCAGCCGCTCTGTAGAGCAGGACTCAAGGGATGGTGTGAGAAGGCCTCAGCAGATCTGACTCTCCCCATAGAGAGCTTCAGAGAGCTTCtgtgtgtgtgtatatgtgtatggaGGCTCAGCAGGAGCAGTTTCCGCAGCCCTTCACGCTGTTCATGATCTCCTCCTGCAGCTTCTTGCGCTCCTCCTCCTTCTGCGAGATGCGCTCGGCCTGCGCCGGGGGTTTGCTGCTGCCGTTGCTGTTCAGGACCTTGCTGTTTTGCGTGTGCCACAGGTCGGCGTACAGACTGCCCGGCATCCTGAGGAGGGTCTGGTGGTCACCGCGCTCCGCTACCTTCC

Function

symbol description
abcb7 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in cellular iron ion homeostasis and transmembrane transport. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in X-linked sideroblastic anemia with ataxia. Orthologous to human ABCB7 (ATP binding cassette subfamily B member 7).

NR:

description
PREDICTED: ATP-binding cassette sub-family B member 7, mitochondrial isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280374 False 2304 lncRNA 0.38 2 19405009 19407338
TU280375 True 2489 lncRNA 0.41 3 19404210 19407338

Neighbor

gene id symbol gene type direction distance location
LOC103038011 uprt,LOC108440089,LOC108443770 coding downstream 44959 19350901 ~ 19359251 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding downstream 135876 19258598 ~ 19268334 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding downstream 767211 18424758 ~ 18636999 (-)
LOC103026001 NA coding downstream 1019158 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 1034186 18356989 ~ 18370024 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 169159 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 186966 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 198687 19606025 ~ 19623243 (-)
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding upstream 498405 19905743 ~ 19913308 (-)
LOC103047376 LOC108413285 coding upstream 507211 19914549 ~ 19932986 (-)
G206613 NA non-coding downstream 147179 19256544 ~ 19257031 (-)
G206597 NA non-coding downstream 233571 19160405 ~ 19170639 (-)
G206593 NA non-coding downstream 264753 19063499 ~ 19139457 (-)
G206595 magt1,LOC107566011,LOC106604089,LOC106592046,LOC107689142 non-coding downstream 266563 19134598 ~ 19137647 (-)
G206589 NA non-coding downstream 378829 19022154 ~ 19025381 (-)
G206640 NA non-coding upstream 88094 19495432 ~ 19511159 (-)
G206634 NA non-coding upstream 106779 19514117 ~ 19516119 (-)
G206653 NA non-coding upstream 158874 19566212 ~ 19566544 (-)
G206685 NA non-coding upstream 194261 19601599 ~ 19681210 (-)
G206763 NA non-coding upstream 407636 19814974 ~ 19851961 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 276484 19037694 ~ 19127726 (-)
G206575 NA other downstream 565294 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1362271 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 1552019 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 2103217 17259786 ~ 17300993 (-)
LOC103046671 NA other upstream 517693 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 550139 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 699759 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 1056365 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 1270115 20677453 ~ 20782984 (-)

Expression


Co-expression Network