G206640


Basic Information

Item Value
gene id G206640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19495432 ~ 19511159 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280386
ccCCGCCAAACTAGCTCAACAAAAGTTgtttattgtgatatttagggattatttttttaatcattacaaGACATACAATGTATAAAACCACTATACAGCCTAAACAGACTGAAGTACATGGaccttttatttgatttattaagcCTGTTTTTTAGGACCAAACATTTTTCACTAACTAATTACAGCTCTCAaaacataaagtaaaatatacagaattttATGACTGAACATTTTTGAGCTGTTTACCAGCTGCCCAGAGAAACATGTGAAACAGCAACAGGTCAATACTGAATTCCACCAGACTTACCAGGACAAGAACTGTCCACTCAAAGTCATCTCCTGGCAGCGGCCTCCGCTTAATGATGCTCCAAAAtacctttcctttcctttccacTGTCCCGGGACAGAAACGGATCGGCGTCTTCAGAGGTCCAACTGtttggtgtttttgttttaaagtacTTAAACAAAATTCAAACCATCCATAAAACGCATAAAACATTTAGCTccacaaaatcacaaaaacacGTATTTCTCTAAAAGGGGGAATAAActagataaagagataaagtaCTCTGAAAGTAACTGTCCATTACTCTGAGTGcagcaatatacagctctggaaagcaataagagaccacttgatgataatgtttctcctaaattttatcaaattaaaaaacctctggaatataatcaagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280386 True 703 lncRNA 0.36 2 19495432 19511159

Neighbor

gene id symbol gene type direction distance location
LOC103038011 uprt,LOC108440089,LOC108443770 coding downstream 136181 19350901 ~ 19359251 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding downstream 227098 19258598 ~ 19268334 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding downstream 858433 18424758 ~ 18636999 (-)
LOC103026001 NA coding downstream 1110380 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 1125408 18356989 ~ 18370024 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 65338 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 83145 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 94866 19606025 ~ 19623243 (-)
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding upstream 394584 19905743 ~ 19913308 (-)
LOC103047376 LOC108413285 coding upstream 403390 19914549 ~ 19932986 (-)
G206629 abcb7 non-coding downstream 88094 19404210 ~ 19407338 (-)
G206613 NA non-coding downstream 238401 19256544 ~ 19257031 (-)
G206597 NA non-coding downstream 324793 19160405 ~ 19170639 (-)
G206593 NA non-coding downstream 355975 19063499 ~ 19139457 (-)
G206595 magt1,LOC107566011,LOC106604089,LOC106592046,LOC107689142 non-coding downstream 357785 19134598 ~ 19137647 (-)
G206634 NA non-coding upstream 2958 19514117 ~ 19516119 (-)
G206653 NA non-coding upstream 55053 19566212 ~ 19566544 (-)
G206685 NA non-coding upstream 90440 19601599 ~ 19681210 (-)
G206763 NA non-coding upstream 303815 19814974 ~ 19851961 (-)
G206782 NA non-coding upstream 563266 20074425 ~ 20074690 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 367706 19037694 ~ 19127726 (-)
G206575 NA other downstream 656516 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1453493 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 1643241 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 2194439 17259786 ~ 17300993 (-)
LOC103046671 NA other upstream 413872 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 446318 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 595938 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 952544 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 1166294 20677453 ~ 20782984 (-)

Expression


Co-expression Network