LOC103046671


Basic Information

Item Value
gene id LOC103046671
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19925031 ~ 19994802 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280559
GATTTAGTATTTAAACCGGCCGTCTTCCGCTGATTACAGCACGGATCCAGAAAAACCGCACCTCGGGAAGAACTCGCAGCAGCTCGAGCACTGAACCAGAACATCCAAAATGAGCGACCACCCAGTTAAACAGGAGGTCCAGAACTTCGACAAGAAGTGTCTAAAGAAGACGAACACGGCGGAGAAGAACACCCTGCCCACTAAGGAGGATATTGAGCAAGAGAAGAAGGCTGCGGAGACCTCAAAATGAAACCCACCCACCCGCCACGGCCCCtgcctccctctccctctctctctctccttccccctTCCCCACTTTCTTTACCCTCTTCCATTTTAAGAGATTTCACATGATCACCGCCTTTACCTTCTGGATTTCTGAAGCCCGTGTTTAAAACATCCCTCAGTCTCCCGCCGCAGGCGAGGAGGCGTAGCAGTGAAGGGGCGGACGAGTGCAGTTGTAAAGCCATGTTTAATTGCAGCTATGGATATTATGAAACTTCTTATCTTGCATTCTTGAGAGTGGAGAAAGATGACCTGGGATCAGTTGAGCAGTCAAGCACAAGCGCCATGTGCGTCACTCGTCACCAGCCGAGCAGCTCTGCCAACCACGCCCTCGTCCGTCTCTGTACCTGGTACCattctggatgagttgttctaTAAATGATATGTAAaatgatatttttgtttaaaaaaaaaaagaataaaaatgttttgaaacatGAAaaaaaaaaaaaaaaaagggacaaCTCCATTCGTATGGTGCAGCAAAGTTACAGTTCTCAGTGATCATATTACGTAGGTTACTATACTTTGTCTGTTGTTAGAATATCACATGGCTTGTCCT
>TU280560
CCCAGACTGTACtgctcttcctccctctctctctctctctctttccccctTCCCCACTTTCTTTACCCTCTTCCATTTTAAGAGATTTCACATGATCACCGCCTTTACCTTCTGGATTTCTGAAGCCCGTGTTTAAAACATCCCTCAGTCTCCCGCCGCAGGCGAGGAGGCGTAGCAGTGAAGGGGCGGACGAGTGCAGTTGTAAAGCCATGTTTAATTGCAGCTATGGATATTATGAAACTTCTTATCTTGCATTCTTGAGAGTGGAGAAAGATGACCTGGGATCAGTTGAGCAGTCAAGCACAAGCGCCATGTGCGTCACTCGTCACCAGCCGAGCAGCTCTGCCAACCACGCCCTCGTCCGTCTCTGTACCTGGTACCattctggatgagttgttctaTAAATGATATGTAAaatgatatttttgtttaaaaaaaaaaagaataaaaatgttttgaaacatGAAaaaaaaaaaaaaaaagggacaaCTCCATTCGTATGGTGCAGCAAAGTTACAGTTCTCAGTGATCATATTACGTAGGTTACTATACTTTGTCTGTTGTTAGAATATCACATGGCTTGTCCT
>XM_015601829.2
AGCAGGGCGTGATTTAGTATTTAAACCGGCCGTCTTCCGCTGATTACAGCACGGATCCAGAAAAACCGCACCTCGGGAAGAACTCGCAGCAGCTCGAGCACTGAACCAGAACATCCAAAATGAGCGACCACCCAGTTAAACAGGAGGTCCAGAACTTCGACAAGAAGTGTCTAAAGAAGACGAACACGGCGGAGAAGAACACCCTGCCCACTAAGGAGGATATTGAGCAAGAGAAGAAGGCTGCGGAGACCTCAAAATGAAACCCACCCACCCGCCACGGCCCCtgcctccctctccctctctctctctccttccccctTCCCCACTTTCTTTACCCTCTTCCATTTTAAGAGATTTCACATGATCACCGCCTTTACCTTCTGGATTTCTGAAGCCCGTGTTTAAAACATCCCTCAGTCTCCCGCCGCAGGCGAGGAGGCGTAGCAGTGAAGGGGCGGACGAGTGCAGTTGTAAAGCCATGTTTAATTGCAGCTATGGATATTATGAAACTTCTTATCTTGCATTCTTGAGAGTGGAGAAAGATGACCTGGGATCAGTTGAGCAGTCAAGCACAAGCGCCATGTGCGTCACTCGTCACCAGCCGAGCAGCTCTGCCAACCACGCCCTCGTCCGTCTCTGTACCTGGTACCattctggatgagttgttctaTAAATGATATGTAAaatgatatttttgtttaaaaaaaaaaagaataaaaatgttttgaaacatGAA

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280559 True 847 lncRNA 0.46 4 19925031 19951107
TU280560 False 587 lncRNA 0.43 3 19925031 19994802
XM_015601829.2 False 736 mRNA 0.49 3 19942842 19951117

Neighbor

gene id symbol gene type direction distance location
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding downstream 11723 19905743 ~ 19913308 (-)
LOC103041262 LOC108440093 coding downstream 301788 19606025 ~ 19623243 (-)
LOC103021299 NA coding downstream 324033 19594304 ~ 19600998 (-)
LOC103041563 LOC108440096,LOC103359160 coding downstream 340796 19576497 ~ 19584235 (-)
LOC103038011 uprt,LOC108440089,LOC108443770 coding downstream 565780 19350901 ~ 19359251 (-)
LOC103045046 LOC103045046,LOC108443105,LOC103391141,LOC107573550,LOC108269394,LOC107674873,LOC101076287 coding upstream 82718 20077520 ~ 20084460 (-)
vamp7 vamp7 coding upstream 104697 20099499 ~ 20104840 (-)
LOC103043510 ednr,LOC103043510,LOC108443108,LOC108268917,LOC104965768,LOC106930986,LOC103470946,LOC106530016,LOC108238010 coding upstream 128345 20123147 ~ 20141059 (-)
LOC103043211 LOC103366304,LOC105906309,LOC108268916,LOC102229095,LOC100704732,LOC107386560,LOC101162152,LOC103395326,LOC105927798 coding upstream 185508 20180310 ~ 20188753 (-)
cysltr1 cysltr1,LOC107703837,LOC107576072,LOC107591877,LOC107688612 coding upstream 245065 20239867 ~ 20244489 (-)
G206763 NA non-coding downstream 73070 19814974 ~ 19851961 (-)
G206685 NA non-coding downstream 243821 19601599 ~ 19681210 (-)
G206653 NA non-coding downstream 358487 19566212 ~ 19566544 (-)
G206634 NA non-coding downstream 408912 19514117 ~ 19516119 (-)
G206640 NA non-coding downstream 413872 19495432 ~ 19511159 (-)
G206782 NA non-coding upstream 79623 20074425 ~ 20074690 (-)
G206784 NA non-coding upstream 91375 20086177 ~ 20086493 (-)
G206843 NA non-coding upstream 370112 20364914 ~ 20372471 (-)
G206856 tbx22 non-coding upstream 423514 20418316 ~ 20418553 (-)
G206859 NA non-coding upstream 538778 20533580 ~ 20537400 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 797305 19037694 ~ 19127726 (-)
G206575 NA other downstream 1086115 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1883092 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 2072840 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 2624038 17259786 ~ 17300993 (-)
LOC103040644 LOC108443111 other upstream 112295 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 468901 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 682651 20677453 ~ 20782984 (-)
LOC103034681 LOC108436714 other upstream 1769302 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other upstream 1984997 21979799 ~ 21982730 (-)

Expression


Co-expression Network