G206859


Basic Information

Item Value
gene id G206859
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20533580 ~ 20537400 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280688
TTTTAAtgaaacaatgttttattttcctgCTCCCTTCGATAATATAAGTCTTTTTTTGGCATAACTTGTCCTCTTTGtacataaaatagaaaaaaaaatgtacacagcGTATCAAGACACTCGGAAGAAAGAGGTAAAGGTACACTAAGTAAAGTGAGTTACATTTGTGCTGTTCAGTAACATTAAGAGCCACCCGAGGATTTGTGATGTATGAGACGTTGTCTGCTACACAGAAAGCATTTCACTGTTGAGTCTTGGGTTTAATAGAATTAATGTAATAGAATCAACATATTGGAAATGGATACAGACATGtgacaaattaaatattttagttttcacTATTGGTATTGCAATAAAGtcaaagactaggcttaatccatcTTCAGCAAAGACCATAGCATGTGATTAATAACATGTTCATATAGACTATTAATTAAACTGTAGAGACTAGAGACTTCAGACATGTTCACAATGGTGCTTGTGCTTTATATACACACCACTTAACACTCCTACAGTAACttactgtaaaatgtatgtaCAGACTGAAcgtttttccaccaaaaaaaaaaaaacttccatttGGGCTTATAAGAACTGTGGTGCATTGCCCACATTCCCACCAATTTTACTCCACCAACAGAGGGCGCTACATAGTGGCGCTGAACAGAAGCGGACATTAACGTTTCTGGTTtcagaacctacttttgttggtgacAAAAGCAACAAActgccggtgttgtgccgaattcagcacccccgccatgaaaagcaccccctctcggctttaacttttttttttttttagaaaatgcaaATATCCAAGATACTCTTTTAAGCTATACTGACCactaagaaataatgaaaaatagtcATGTGACCAGCAGCCTTTGCTATGAGGGAGTGCTTTTCATTACGGGGGGGCTAAATTAGGCACAATAGTAGTGCTAAAATCTGCACCCCGCCGTGAAAAGCACCACATCTTAGAAGCACGTTACGCatcgtcttcttgataaaagcgatGATAATCTGCTTTAATTTTACTTCGAAATACactcccgagagagggtgcttttcctggcgggggttctgaatttggcacaacaccagttcCAGTTCCAGCAGCCTAGATGCTGAAACACCATCATGTTTTCAGGTTCATTCCTGGCCACACAATTGGTCCAATACAGCAGTTAAACGCTATATTAAGTGTTAAATGCTAGTACTGCCCATCATGAGCATGAGTTCCATGTAATAATGTTCTATTTCCTTGTGTGATTGTCCTTTTAAAGAATAATTTGGAAAATATTAATGCAAAATTAAAGTttctacctttttttttgttcacttagTGTACCTTTAAAAAAGTCACCACAATCTCAGAGATTAAAAGACAAAAGCAAAATCCTTCCACACAAAATGGCAGATTTAAGACTACAGCACTAGACTCTGACACCAGAGCGaaacatttaagaatatatAAGACGTAACTATTAGTTGTATAGCCCTTTAACGTTATGTACCAGGGGATCTTTTATGATGAAACTCTAGGGATGGACTGATGGATGCTAAGTGCATTCTGTGTTGCAATGCAGGCACTAGTTatttaggctacgttcacacagaAGGTAAAAGGGGCTCAAATTAGATTCagaaataccttttttttttttttttttagaaatgaacCATATCTTACATTATATAACAACAGTTAGCTTTGCTTAACTGCGCTACATGCATGTGAATAAAAATCAACATgcgcttcacatgaagtttcggtttcatccttGCCAAATCATTAGAAATATGCAGCAATTCATGAAGACAGCTAGGCTTTTTATTATGTTTCCTCGTACACTCACatcatttttcctttcttcttgacATAAAAATCTCAAATCAGTATTAAAAACATTagatttaatgtttgttttttgctgttcaAATGCCACAAATGACGCATTTGAGCCTGATTTTTACCTGATGTGAGAACACAGCCCCATATACTTGGCACTTTatgaacataaacataaacatataccacCATATGAGCATTAAGTGTATGCTTGAAAACAGAACTGAACTTCTAAAAGAAGAAAGATGGCACATACTGTATAACATTCCAATAACTGGTATGAACGAGTGAGTAATCAATCCACTGTCGTAAGACGTTCATCTTTAAGACGTTTAGGAGCAGGATGGACAAAAACAGAccatctatttgtttttttttttgttggagggGACAGTAATGTCTAAAAATAACAGTAACGATAACGGTGGAATGTTGATAGGAGTGAAAGGACAGAACAGGTAGTAGTATTTTGTGTTTGCGGTCTCTGTCGGTGAAGAGGGGAAGCGCTGGAGTCTAGCTGCAGTCTTGGAGAAAATGGAGGGTAATGGAAGATGTTGTGGACTACTGCTGTTCTTTTTTGGCAAGAGCCTCCGCCTcctgaagagaaagaaagaaagagagagagagagagaaaaaaaaacatagacaaAC

Function

NR:

description
PREDICTED: vesicle transport protein GOT1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280688 True 2506 lncRNA 0.37 2 20533580 20537400

Neighbor

gene id symbol gene type direction distance location
LOC103041461 chmp1b,LOC101476317 coding downstream 92084 20433525 ~ 20441496 (-)
itm2a itm2a coding downstream 151570 20372886 ~ 20382010 (-)
cysltr1 cysltr1,LOC107703837,LOC107576072,LOC107591877,LOC107688612 coding downstream 289091 20239867 ~ 20244489 (-)
LOC103043211 LOC103366304,LOC105906309,LOC108268916,LOC102229095,LOC100704732,LOC107386560,LOC101162152,LOC103395326,LOC105927798 coding downstream 344827 20180310 ~ 20188753 (-)
LOC103043510 ednr,LOC103043510,LOC108443108,LOC108268917,LOC104965768,LOC106930986,LOC103470946,LOC106530016,LOC108238010 coding downstream 392521 20123147 ~ 20141059 (-)
hdx hdx coding upstream 248614 20786014 ~ 20800527 (-)
tenm1 tenm1,LOC105906218 coding upstream 443355 20980755 ~ 21355637 (-)
LOC103037071 arhgef9,LOC108436700,LOC108269078 coding upstream 993360 21530760 ~ 21599719 (-)
LOC103036462 LOC108436702,LOC105906303,LOC106604272 coding upstream 1075433 21612833 ~ 21617288 (-)
LOC103036162 zc4h2,LOC103036162,LOC108436709,LOC108269407 coding upstream 1085844 21623244 ~ 21630047 (-)
G206856 tbx22 non-coding downstream 115027 20418316 ~ 20418553 (-)
G206843 NA non-coding downstream 161109 20364914 ~ 20372471 (-)
G206784 NA non-coding downstream 447087 20086177 ~ 20086493 (-)
G206782 NA non-coding downstream 458890 20074425 ~ 20074690 (-)
G206763 NA non-coding downstream 681619 19814974 ~ 19851961 (-)
G206912 NA non-coding upstream 180549 20717949 ~ 20725371 (-)
G206991 NA non-coding upstream 663773 21201173 ~ 21208804 (-)
G206998 NA non-coding upstream 859314 21396714 ~ 21396928 (-)
G207000 NA non-coding upstream 867057 21404457 ~ 21404698 (-)
G207035 NA non-coding upstream 945438 21482838 ~ 21524192 (-)
LOC103040850 hmgn5 other downstream 21293 20463703 ~ 20512287 (-)
LOC103040644 LOC108443111 other downstream 258675 20107097 ~ 20274905 (-)
LOC103046671 NA other downstream 538778 19925031 ~ 19994802 (-)
LOC103046056 NA other downstream 565549 19957477 ~ 19968031 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 1405854 19037694 ~ 19127726 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 140053 20677453 ~ 20782984 (-)
LOC103034681 LOC108436714 other upstream 1226704 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other upstream 1442399 21979799 ~ 21982730 (-)
LOC103035944 mical3 other upstream 2348032 22885432 ~ 22956024 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other upstream 2683069 23220469 ~ 23412954 (-)

Expression


Co-expression Network