LOC103039395 (rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076)


Basic Information

Item Value
gene id LOC103039395
gene name rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20677453 ~ 20782984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU280768
ACAGGGAGCAATGGCTGCCACATACTCAGCGCTGAATCATAAGACGTGTCAGCCGGTCCTGGAACCTGTGGCGGCTTCCAGTTTGGCCCAGCGGCGAAGCATGAAGAAGCTGACTTCCACCGACATGTcgtgaaaacaaacaaaaaaaaacgagcAGCGTTAACTTCACTGTGTCCTCCCCTCTCCAACCTCTCCACCCTCTCCCTCGTTTTTCTgtctatttatttagatttccCTCTGTCCCCACCAACCCTACCTACCCCACGTTTACCCCGGCATTTACCCTGGCCTGCCGAACCCAGTAATTGGACCTCAAGACACCATGCTTTTCACATCAGGGAGGCTGTTTAGCGAGTGAGAGTGCAGAGACTGGGAGAGCTCGCAAAAAATGGCTGAAGTTCAAATCCAAACAGCTGCAGGGGCTGCAatgactttatttaatttattttatttttttatacacatttcTCTTGTATGCATTctctaaggcccaatcccatttcaccccttaaccctaccccttaccccttgtttttgagtaaaACCCTTCCCCTTTGGAACAGAGTTAGAAGGGGAAACCGTTTAAGCACCcaatacgtcatcaggagcgctaaagttcagcaacctagctgctgctgctactggtggttaactagttaactttagggcttaTTTTATTGTACGTCTTCAGAAAGAAGGGGAGATAGTgtagaaatgaattattattattattattattattattattatttatgtccattccttaattcctctgtgattcctaagctgaaattagctttgattagcatttattttattttatttaatttttccctTCCGCCTTAAATACTACAGcttctgccatctgttgcactgttgcaccatttaaggtggaacgggaaagttagctagcaagctagttaATGAGACAAACTGTTTTTACaaactaatcttttttttttttttttttttgttatgcttgttataaagaattcggccataaaacattaaaactagtgaaactacacattaaactatggtatataatataatctatgctaatcatcacttttaacaaggaagaTACCTACttatttgtgggttttttttgttgttgtttttttttttttttttaaaccagtgaTTCTCATCACTTCCcctcggtttgaagtgtgcatctaaaaaaaaaaaaaaaaatctctgtttgaaaagggattgggcctaaatctgtctttttctttctctctctctctcttcctccttttagctgaataagaaaagaaaacaaaaaacaaacaaaaaaaaaaaaggaaaacagcaCCAGCGCCTATTCTCATTCACTGTGACTGGCCGACCTGAAGCTGCTTTAAGTAAACTGTGTTCCACTTTCTTTCCCCAGTTCCGTAAGCATGTCGCTCCGTTGCTCCGTCGCTCCGTCTCCTCCACTCCTCTTCCTCATCCCTCGCTCTGCCCTCGCTCTAGGAATCCCCTTCCTTCTCCTGTCTCTTGACAATAGATCACCTGGGCTCGGCGCCTGGAGAGCGAGCGGGTGGAAGACTCCGGTTTTAAGCCACTTAGCGCGCCGCTGAAGGAATCGTATCGGCGTCGGCAGGGGATGAGCCTCGAGTCTGAACCCCTCTGACGTTTTACCTCAAGAAGCTCTAAGAGTAAGAGAGCGCCGGGCGGAGGCTTctgcttcttcctcttcttcttctttaagctTAGAGAGCTCGCGTTCAGAattcagcagcagagagagcgTCAAACACACCTGCCAGCCCTCGTCGGACCCGATCAATCCTCCTCGTCTTGTCGAATATATTTAAGCACATTTGCACTGAGACCTGGCAGGTTGTTGCTTTCCCTCTTTTGCTCTGTCactctgttttttctttctgttttctctgatTTCTCCCTCTaccaagttttattttttgtgtatttttttttttgcaattttttgctTCGGACcgcctttaaaatattttttttggatgaaaataagctaaaggtaaaaaaacaaacaaacaaacaaacgaaaaaaaaatctatcaaaaGGTCAATGAATGTGGACTAGACTTCTTCATAGTGTTTGGGGCGCTGTTTTTGATCCAGTGTTATTGTATTGACTGCGAGCCAAGGACTCATGGGATTGGGGAAGGGAACCCTCTGCTCCAAGAGCGGC
>TU280769
ACAGGGAGCAATGGCTGCCACATACTCAGCGCTGAATCATAAGACGTGTCAGCCGGTCCTGGAACCTGTGGCGGCTTCCAGTTTGGCCCAGCGGCGAAGCATGAAGAAGCTGACTTCCACCGACATGTcgtgaaaacaaacaaaaaaaaacgagcAGCGTTAACTTCACTGTGTCCTCCCCTCTCCAACCTCTCCACCCTCTCCCTCGTTTTTCTgtctatttatttagatttccCTCTGTCCCCACCAACCCCgccaaccca
>TU280770
ACAGGGAGCAATGGCTGCCACATACTCAGCGCTGAATCATAAGACGTGTCAGCCGGTCCTGGAACCTGTGGCGGCTTCCAGTTTGGCCCAGCGGCGAAGCATGAAGAAGCTGACTTCCACCGACATGTcgtgaaaacaaacaaaaaaaaacgagcAGCGTTAACTTCACTGTGTCCTCCCCTCTCCAACCTCTCCACCCTCTCCCTCGTTTTTCTgtctatttatttagatttccCTCTGTCCCCACCAACCCTACCTACCCCACGTTTACCCCGGCATTTACCCTGGCCTGCCGAACCCAGTAATTGGACCTCAAGACACCATGCTTTTCACATCAGGGAGGCTGTTTAGCGAGTGAGAGTGCAGAGACTGGGAGAGCTCGCAAAAAATGGCTGAAGTTCAAATCCAAACAGCTGCAGGGGCTGCAatgactttatttaatttattttatttttttatacacatttcTCTTGTATGCATTctctaaggcccaatcccatttcaccccttaaccctaccccttaccccttgtttttgagtaaaACCCTTCCCCTTTGGAACAGAGTTAGAAGGGGAAACCGTTTAAGCACCcaatacgtcatcaggagcgctaaagttcagcaacctagctgctgctgctactggtggttaactagttaactttagggcttaTTTTATTGTACGTCTTCAGAAAGAAGGGGAGATAGTgtagaaatgaattattattattattattatttatgtccattccttaattcctctgtgattcctaagctgaaattagctttgattagcatttattttattttatttaatttttccctTCCGCCTTAAATACTACAGcttctgccatctgttgcactgttgcaccatttaaggtggaacgggaaagttagctagcaagctagttaATGAGACAAACTGTTTTTACaaactaatcttttttttttttttttttttgttatgcttgttataaagaattcggccataaaacattaaaactagtgaaactacacattaaactatggtatataatataatctatgctaatcatcacttttaacaaggaagaTACCTACttatttgtgggttttttttgttgttgtttttttttttttttttaaaccagtgaTTCTCATCACTTCCcctcggtttgaagtgtgcatctaaaaaaaaaaaaaaaaatctctgtttgaaaagggattgggcctaaatctgtctttttctttctctctctctctcttcctccttttagctgaataagaaaagaaaacaaaaaacaaacaaaaaaaaaaaaggaaaacagcaCCAGCGCCTATTCTCATTCACTGTGACTGGCCGACCTGAAGCTGCTTTAAGTAAACTGTGTTCCACTTTCTTTCCCCAGTTCCGTAAGCATGTCGCTCCGTTGCTCCGTCGCTCCGTCTCCTCCACTCCTCTTCCTCATCCCTCGCTCTGCCCTCGCTCTAGGAATCCCCTTCCTTCTCCTGTCTCTTGACAATAGATCACCTGGGCTCGGCGCCTGGAGAGCGAGCGGGTGGAAGACTCCGGTTTTAAGCCACTTAGCGCGCCGCTGAAGGAATCGTATCGGCGTCGGCAGGGGATGAGCCTCGAGTCTGAACCCCTCTGACGTTTTACCTCAAGAAGCTCTAAGAGTAAGAGAGCGCCGGGCGGAGGCTTctgcttcttcctcttcttcttctttaagctTAGAGAGCTCGCGTTCAGAattcagcagcagagagagcgTCAAACACACCTGCCAGCCCTCGTCGGACCCGATCAATCCTCCTCGTCTTGTCGAATATATTTAAGCACATTTGCACTGAGACCTGGCAGGTTGTTGCTTTCCCTCTTTTGCTCTGTCactctgttttttctttctgttttctctgatTTCTCCCTCTaccaagttttattttttgtgtatttttttttttgcaattttttgctTCGGACcgcctttaaaatattttttttggatgaaaataagctaaaggtaaaaaaacaaacaaacaaacaaacgaaaaaaaaatctatcaaaaGGTCAATGAATGTGGACTAGACTTCTTCATAGTGTTTGGGGCGCTGTTTTTGATCCAGTGTTATTGTATTGACTGCGAGCCAAGGACTCATGGGATTGGGGAAGGGAACCCTCTGCTCCAAGAGCGGC
>XM_022684333.1
GCGCGTCTCCGCAGCCCGGGTTTGATGGGATGGGGAAATCCTAAACTGAACTGCGTCAGGGCGACGTCAGCGCTCAGCTCCGTTGCTGTGGGTAGCACGGAGGCGGCCATATTCGTGTCAATGGGAAAGTAAGAGGCGTCCGGTCCGCGTATGGTCCAGCCGAGCAGACCCTCCTCCGCTAGCGACCCTCCGGCTGCGCTGCACGCAGGCGCCTGCCTCACTCCCCCACCCCCGACTCCCGACCCACCGACCGACAGACCAACCGAGCCAGCGAGCGAGCGGGGCCGCCGAGCTTCTGAGCGGGGAGAGAGGGAATGCCGCGGCGCGCTCGGCTGTAGTTAGCTAGTTTTACCACCGCGGGGATGATGATGCCTTTCGCCCAGCCACAGGATTCCTGGCACAAGATGGAGGTGCACGGCGTTAGCAGTGAGGTCAATGGGCATCAGATCACGGATGAGCCAATGGAAGAGGGAGAGTCCTACACGCACTGTgatGAAGGGTCCTATAAGGAGATCCCCATCACTCACCATGTGAAGGAGGGCTGTGAGAAGGCCGACCCTTCCCAGTTCGAGCTGCTGAAAGTTCTGGGTCAAGGATCGTTTGGAAAGGTGTTCCTGGTGCGGAAGATAATGGGCCCGGATGCTGGTCAGCTATATGCAATGAAAGTCCTGAAAAAGGCATCTTTAAAAGTGAGGGACAGGGTTCGCACAAAGATGGAGCGGGATATTCTGGTGGAAGTGAATCATCCCTTCATTGTAAAGTTGCACTATGCCTTTCAGACAGAAGGGAAGCTCTATTTAATTTTGGATTTTCTCAGGGGTGGAGATGTATTTACTCGCTTATCCAAAGAGGTTATGTTTACAGAGGAGGATGTGAAATTCTACCTTGCAGAGCTGGCCCTTGCATTGGATCACCTTCACAACCTAGGCATTGTTTACAGAGACCTGAAGCCTGAAAACATTTTGCTTGATGAAGCTGGACATATCAAGTTAACAGACTTTGGGCTCAGTAAAGAATCAGTAGACCAGGATAGAAAAGCATACTCTTTTTGTGGCACTGTGGAATATATGGCCCCTGAGGTGGTCAACAGGAGaggacacacacagagtgcTGACTGGTGGTCACTAGGCGTTCTAATGTTTGAAATGCTTACGGGGACGCTACCATTTCAAGGAAAAGACCGGAATGAGACTATGAACATGATTCTCAAaGCTAAGTTGGGAATGCCACAGTTTTTAAGCCTGGAAGCACAAAGTCTTTTACGAATGCTCTTTAAAAGAAACCCAGCTAATCGATTAGGAGCAGGTCCAGATGGAGTAGAGGAGATCAAGCGGCATGCCTTCTTCTCCACAATAGACTGGAATAAACTCTACCGACAAGAACTTCAGCCTCCGTTCAAACCAGCAGCGGGAAAACCAGACGACACGTTCTGCTTTGACCCCGAGTTCACAGCCAAAACCCCAAAGGACTCTCCAGGCATTCCTCCCAGTGCAAACGCTCACCAGCTCTTCAAAGGCTTCAGCTTTGTAGCGCCAGCTTCCCTGGAGGAGAGCAAGAGCTCTCCCTTCAACATCCTCCCCATCGTGCAGATGCACAGTGGTGCAGCACAGTTCTCAGACGTGTACGAACTCAAAGAGGACATTGGTGTGGGATCCTACTCCATATGCAAACGCTGCATCCACAGAGTTACAGCCATGGAGTTCGCAGTCAAGATAATTGACAAAAGCAAGCGGGACCCATCGGAGGAGATTGAGATTCTCATGCGGTACGGGCAGCACCCAAATATCATCACCCTGAAAGATgtgtACGACGAGGGGCGGTTTGTGTATCTGGTAACGGAGTTGATGAAGGGCGGGGAGCTGCTGGATAAGATACTCAGGCAGAAGTTCTTCTCAGAACGAGAGGCCAGTGCTGTTCTCTACACCATCACCAAAACCGTCGACTACCTGCACTGTCAGGGGGTGGTTCACAGGGACCTGAAGCCCAGCAACATTCTGTACATGGACGATTCAGGGAACCCCGATTCGATCCGAATCTGCGACTTCGGCTTTGCCAAGCAGCTCAGAGGAGACAACGGCCTGCTGCTCACGCCCTGCTACACTGCCAACTTCGTGGCACCTGAGGTATTGATGCGGCAGGGCTATGATGCAGCCTGTGATATCTGGAGTCTGGGAGTTCTTCTCTATACTATGCTGGCTGGGTACACTCCCTTTGCTAATGGCCCTAACGATACCCCTGAAGAGATCCTGTTACGTATCGGCAGTGGCAAGTTCTCGCTCAGCGGAGGCAACTGGGACACAGTGTCCGACTCCTCAAAGCTTCCTGGAGATGCTTCCCTTCCCATTTGCTTTGCTTTACGAAACGCTATGAAAGCTAATTATTCCCATTTCTTACAGGGAGCAATGGCTGCCACATACTCAGCGCTGAATCATAAGACGTGTCAGCCGGTCCTGGAACCTGTGGCGGCTTCCAGTTTGGCCCAGCGGCGAAGCATGAAGAAGCTGACTTCCACCGACATGTcgtgaaaacaaacaaaaaaaaa

Function

symbol description
rps6kal Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator and peptidyl-serine phosphorylation. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RPS6KA6 (ribosomal protein S6 kinase A6).
rps6ka6 Predicted to enable ribosomal protein S6 kinase activity. Involved in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator. Located in fibrillar center; mitochondrion; and nucleoplasm.

NR:

description
PREDICTED: ribosomal protein S6 kinase alpha-6

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

RNA

RNA id representative length rna type GC content exon number start site end site
TU280768 False 2185 lncRNA 0.42 3 20741059 20743301
TU280769 False 263 lncRNA 0.52 2 20677453 20743301
TU280770 False 2173 lncRNA 0.42 3 20741059 20743301
XM_022684333.1 True 2542 mRNA 0.52 22 20743152 20782984

Neighbor

gene id symbol gene type direction distance location
LOC103041461 chmp1b,LOC101476317 coding downstream 235957 20433525 ~ 20441496 (-)
itm2a itm2a coding downstream 295443 20372886 ~ 20382010 (-)
cysltr1 cysltr1,LOC107703837,LOC107576072,LOC107591877,LOC107688612 coding downstream 432964 20239867 ~ 20244489 (-)
LOC103043211 LOC103366304,LOC105906309,LOC108268916,LOC102229095,LOC100704732,LOC107386560,LOC101162152,LOC103395326,LOC105927798 coding downstream 488700 20180310 ~ 20188753 (-)
LOC103043510 ednr,LOC103043510,LOC108443108,LOC108268917,LOC104965768,LOC106930986,LOC103470946,LOC106530016,LOC108238010 coding downstream 536394 20123147 ~ 20141059 (-)
hdx hdx coding upstream 3030 20786014 ~ 20800527 (-)
tenm1 tenm1,LOC105906218 coding upstream 197771 20980755 ~ 21355637 (-)
LOC103037071 arhgef9,LOC108436700,LOC108269078 coding upstream 747776 21530760 ~ 21599719 (-)
LOC103036462 LOC108436702,LOC105906303,LOC106604272 coding upstream 829849 21612833 ~ 21617288 (-)
LOC103036162 zc4h2,LOC103036162,LOC108436709,LOC108269407 coding upstream 840260 21623244 ~ 21630047 (-)
G206859 NA non-coding downstream 140053 20533580 ~ 20537400 (-)
G206856 tbx22 non-coding downstream 258900 20418316 ~ 20418553 (-)
G206843 NA non-coding downstream 304982 20364914 ~ 20372471 (-)
G206784 NA non-coding downstream 590960 20086177 ~ 20086493 (-)
G206782 NA non-coding downstream 602763 20074425 ~ 20074690 (-)
G206991 NA non-coding upstream 418189 21201173 ~ 21208804 (-)
G206998 NA non-coding upstream 613730 21396714 ~ 21396928 (-)
G207000 NA non-coding upstream 621473 21404457 ~ 21404698 (-)
G207035 NA non-coding upstream 699854 21482838 ~ 21524192 (-)
G207038 NA non-coding upstream 711630 21494614 ~ 21569589 (-)
LOC103040850 hmgn5 other downstream 165166 20463703 ~ 20512287 (-)
LOC103040644 LOC108443111 other downstream 402548 20107097 ~ 20274905 (-)
LOC103046671 NA other downstream 682651 19925031 ~ 19994802 (-)
LOC103046056 NA other downstream 709422 19957477 ~ 19968031 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 1549727 19037694 ~ 19127726 (-)
LOC103034681 LOC108436714 other upstream 981120 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other upstream 1196815 21979799 ~ 21982730 (-)
LOC103035944 mical3 other upstream 2102448 22885432 ~ 22956024 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other upstream 2437485 23220469 ~ 23412954 (-)
dnajc24 dnajc24 other upstream 3155941 23938925 ~ 24020314 (-)

Expression


Co-expression Network