CI01000009_13233918_13237052 (ZNF385B)


Basic Information

Item Value
gene id CI01000009_13233918_13237052
gene name ZNF385B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13233350 ~ 13237052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_13233918_13237052.mRNA
CCCAGGAAGCCTGCAGCCGTGGCATTAGTGCGGACTGACTACAAATGCAATTTTTGCAATTTTCAGATTAAAAAGATCACCGTTTCCCTGAGCGCATCATTCCCCTTTTGCAGCCATCCATTACACCGGCCATTCAGTTGTAGTGCTCAAGAGATCGTGGCTCGGACCCGTGGGCACGAGGTATGCGAGTCAGGTCTCTTCGTAAAAGCAACAGATGGGCACAGGAGGTCAGTCCATAGCTCTGTGCCCGCTCCACAAGTGGGGAAACTTGGCTTGAGTGTACCGAGGGGAGGAGTCAGAGCTCAGGGAGGAGAGAAGTCAGCCACCCGTGTAGCCCACACAAGCGCTCCAGACATCCTCACTCACACACGTTCCCACTTCTCTACCTTGGTGGTTTTAGGATGTAAACTCTCCCCACCTGGTGTTCAAAAAGCTCTGTGTGGGGTGATGTTGAATTCAGAAGGTATGAAGACCCCCTTGAGCCCCACCCAGCTCATAGAAAATGGACAGCTGTGCTTCGCCATCCCAGGCTGCATGGAGGTAAAGGAGCCTAGCAATGCCAACGCGGACATGCAGCTCCAGCAGGAGAAGAAGAAGCTGCTCTACTCGCTTTGTGAAGTCTGCAACATCCAGCTGCACTCCGCCACACAGGCCCAGGTTCACTACAACGGCAAGTCTCACCTCAAGAGGGTCAAACAGTTGAATAAAGGAGAGCTGCCCACGGCAAGTGTCGGCTCGGCTCCCACTTCTTTACACTCTCTCAGCAGCAGTGGCAGTCAAGCAACCTTCCACTATCAGGTCCTGAACTTTAGGACACTACAGAGACCACTCACACCACTTTGGCAAACAAGCTTTGCTCAGAGTTCTTGCAAATGGCCTGTGGTGGTTCTGGCATGTGTAACTGGTGCGAATGGCAGCAACTGCACTTGACCAGTAAGTGACAGTTTATCAGTGTGTTCACAGTCTGGTTGGTGAATGGAACTGTTGAGACTAAAAAAAAGGTGAACCTGTATTAATGGCTCATTCAGTTTATGAGTAGGATCCAGATGCATACCAGGTTACCTTCATATTTAAACAAACATGCTCTTGTTTTGCATGTTACCTGGGAAACATTTTGGGTTGCATTGATGCAAGATGGGCAGAGGATCTGTGAGAAGTTAGTGCTGGACTGGCAGGCGAGACTGTGGCTTCCAGTGCAGTGTCAGAGTGGTGCTGACCAAACTTTCATTAGATTGGTGGAAAAGTAGCATACAGGCTACAGACATTAGACAGACTGTGTTGGACTCCATGGGAAAACTTTTGCCTCTTTTGAAGGGGCGGCCAAAGCAAAATGGAAATTTTTATTCAGTTTGAAGAGCTTATTGCGCTATTAGAAGGTCTACTATGTCATAGCGAATTTCATGACTTTATGAATGCTGGTAAAATAATCTGTGTGCTTTCGCTTATGAAGAATCGCAGATATGATTTTTTCCCACCATGACGTTACTCTACTATTAAA

Function

symbol description
znf385b Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in intrinsic apoptotic signaling pathway by p53 class mediator. Predicted to act upstream of or within apoptotic process. Predicted to be active in nucleus. Is expressed in brain; cardiovascular system; gut; notochord; and retina. Orthologous to human ZNF385B (zinc finger protein 385B).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_13233918_13237052.mRNA True 1498 mRNA 0.48 5 13233350 13237052

Neighbor

gene id symbol gene type direction distance location
CI01000009_13161845_13162324 NA coding downstream 71026 13161766 ~ 13162324 (-)
CI01000009_13124087_13152851 ZNF385B coding downstream 80128 13123994 ~ 13158324 (-)
CI01000009_13068379_13105228 SESTD1 coding downstream 128122 13067450 ~ 13105228 (-)
CI01000009_12863333_13023317 NA coding downstream 210033 12862620 ~ 13023317 (-)
CI01000009_12715240_12852745 NA coding downstream 380539 12715240 ~ 12852811 (-)
CI01000009_13273365_13305127 CWC22 coding upstream 36313 13273365 ~ 13305127 (-)
CI01000009_13350460_13383813 NA coding upstream 113105 13350157 ~ 13384669 (-)
CI01000009_13585375_13664189 CERKL coding upstream 348323 13583450 ~ 13664189 (-)
CI01000009_13667246_13668040 NDF1, NEUROD1 coding upstream 429401 13666453 ~ 13668597 (-)
CI01000009_13761020_13794137 PDE1A coding upstream 523058 13760110 ~ 13794188 (-)
G59274 NA non-coding downstream 7988 13207082 ~ 13225362 (-)
G59275 NA non-coding downstream 26746 13198502 ~ 13206604 (-)
G59276 NA non-coding downstream 34954 13110635 ~ 13198396 (-)
G59280 NA non-coding downstream 48862 13162876 ~ 13184488 (-)
G59292 NA non-coding upstream 33793 13270845 ~ 13271446 (-)
G59363 NA non-coding upstream 89493 13326545 ~ 13327384 (-)
G59457 NA non-coding upstream 443926 13680978 ~ 13681722 (-)
G59473 NA non-coding upstream 463540 13700592 ~ 13787413 (-)
G59097 NA other downstream 943832 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 4372787 8856310 ~ 8860563 (-)
G55814 NA other downstream 4805338 8425821 ~ 8428012 (-)
G53515 NA other downstream 7728102 5502395 ~ 5505248 (-)
G52828 NA other downstream 9001881 4217420 ~ 4231469 (-)
CI01000009_13975122_13976026 NA other upstream 738336 13975099 ~ 13978614 (-)
G59490 NA other upstream 796512 14033564 ~ 14037873 (-)
G59811 NA other upstream 1625345 14862397 ~ 14887464 (-)
G59941 NA other upstream 1895052 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 2139208 15318811 ~ 15390382 (-)

Expression


Co-expression Network