G207272


Basic Information

Item Value
gene id G207272
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 22404280 ~ 22406529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU281246
TAAGTCAGCATCTGCAGTCTCACATACTGTAATCGTCATAAATGATTGCTGCTTACAACTCACACAAATTACCAAACAGCTAAGGCCATATTACTGTTAATTACCATATAATTCTGCAGATTTGCTGATACCATAAACACTGCTGTTTGTTTAGAGATtttggcattagctgctaaactgaattttcatgtcttcactgccatttatattaaacatttagatattttatattgtttctaGATCTAGTTGTTGACCtacatatgttttaaaatgactCAATCTGTTCTCCGGGCTTcggaacatgtttttttcaagTTGATAACCATCTGACCTCTGTATGATATGAAAGATACTCAACTTTAAAGtgcctgattttttttatgtaaataggCAATTATTTACAATGCCTTGAATACGttttcataccccttgaactttccCACATTATTCCACTGTATTTTCATGTGAAACCAACAaagttcatttaatttaatttattgggATTTTATGTGATAGACCAACCCAAAGTCGCAAGTGCCTgtgaacagcaatgtttaaGTCTTGACACAGATGCCCAATGAGATTTAGGTAGGTCAGGACTGGGTCACTGATCTAAACCCtaccactgtagctctggctgtatttttagggtcattgtcctgctggaaggtcTTAAGTCTTTTGCTGCGtctaacaggttttcttccaggattgtcctgtattaatctccatccatctttctatCAACTTTGAGTAGCTTCCATGTCTCTGCTGAAGGAAAGCCTCCACACAGTaggatgctcccaccaccatgtttcacagtgaggATGTTGTGTTTAGGGCGCCAACAATAGTGCTTTGCATTTaagccaaaaagttcaattttggccAATATTATCTTTTTCCCACAGTGAGCATGGGCCTCTTGAATTCTCCTCTATTGCTCAAGCTGTCAGTTTAGGTGGacagccatgtcttggtaggctTGCAGTTGTACCATAGTCCttttatttttggatgatggattgaacagttcTCTTTGATATACTCAAAACTtgggatgtgtttttataacatAGGTTCTTgatcttcatgatgctgtttgttcactagtgttctctaacaaaccacttcATAGGCCTTCATAGAACAGCTGTagttatactgagactaaatgaCACACAGCTGCAGGACTCACTAATTAGGTGACTTTTGAAGGAAAGTGGTCAcattggatttatttatttagtgcttTTAGAGTAAAGAGGGCTGAATAGAAATGAAAAGTGTGGACAccacatttttatgatttttatttatttaaaaaaaattaaaccatgtataatttttatctttacttcacaattatgttgTGTTGGTCAATCACAAAAATGCTAATAGATTACAAGCATGCGCAAGTGTGTAGaaaagtgaaaaagttcaagtggtattaatacttttttaaagctcTGTATCAAGTGGCAATGGCAGTGTGATTCCTCTTCTTGTGACGGGAAGTTAAATTATGCTTTTAGAGACTAACctgctattttatatatttttaattgctgTCACATTCATCATCTTACCCTAATTATTTATACATGGCTAACAAAATGGATTAGCATTCATTTGCAGCAGAGTTATCGAGCTATTGACGATGCTGTGTATAAACGAGCCTCAGCACAAAACACTGTACAGCGTACCACCATCCATCACCCCTGCTGGGCTCTGCGTGCCTCATAATGAATTTTAATAATGTACTTTACAGCGTGCTGTTCCTCagtgtaagagcacattaactgcTTTAAGACTGCTTTAACTGAGACACTTCAGCATAGCTCAGTGTTGTTAGTCGTGTTGCATATTATATCGATGGGTATCTGATCTGTATACTGGTGTAATCAGTCAGAATACTTATAACCACTGTACTTGCTAAAAAAAACCtgggatttcttttttttttttttttttacaaaaatcatgtttttaatagctatcacattaaattaagcCTTTTGTAACAAAGCTGATCTCCGTTATCTGATTACTGCTGTTACTCATTTCTTACATTCTTTTGCATTAAAGTACGTAGTTCCACTGCTTACacttttattagtattttgcACACAAGGATATACAAaattgttttactttattttaactgaCCACATATAACTCTTGAGGCATCTTTTGGATCATATTTTCGGATCATTTCATCTAAAAGTTGATTTCCCAGCCTAATGAAAG
>TU281247
TAAGTCAGCATCTGCAGTCTCACATACTGTAATCGTCATAAATGATTGCTGCTTACAACTCACACAAATTACCAAACAGCTAAGGCCATATTACTGTTAATTACCATATAATTCTGCAGATTTGCTGATACCATAAACACTGCTGTTTGTTTAGAGATtttggcattagctgctaaactgaattttcatgtcttcactgccatttatattaaacatttagatattttatattgtttctaGATCTAGTTGTTGACCtacatatgttttaaaatgactCAATCTGTTCTCCGGGCTTcggaacatgtttttttcaagTTGATAACCATCTGACCTCTGTATGATATGAAAGATACTCAACTTTAAAGtgcctgattttttttatgtaaataggCAATTATTTACAATGCCTTGAATACGttttcataccccttgaactttccCACATTATTCCACTGTATTTTCATGTGAAACCAACAaagttcatttaatttaatttattgggATTTTATGTGATAGACCAACCCAAAGTCGCAAGTGCCTgtgaacagcaatgtttaaGTCTTGACACAGATGCCCAATGAGATTTAGGTAGGTCAGGACTGGGTCACTGATCTAAACCCtaccactgtagctctggctgtatttttagggtcattgtcctgctggaaggtcTTAAGTCTTTTGCTGCGtctaacaggttttcttccaggattgtcctgtattaatctccatccatctttctatCAACTTTGAGTAGCTTCCATGTCTCTGCTGAAGGAAAGCCTCCACACAGTaggatgctcccaccaccatgtttcacagtgaggATGTTGTGTTTAGGGCGCCAACAATAGTGCTTTGCATTTaagccaaaaagttcaattttggccAATATTATCTTTTTCCCACAGTGAGCATGGGCCTCTTGAATTCTCCTCTATTGCTCAAGCTGTCAGTTTAGGTGGacagccatgtcttggtaggctTGCAGTTGTACCATAGTCCttttatttttggatgatggattgaacagttcTCTTTGATATACTCAAAACTtgggatgtgtttttataacatAGGTTCTTgatcttcatgatgctgtttgttcactagtgttctctaacaaaccacttcATAGGCCTTCATAGAACAGCTGTagttatactgagactaaatgaCACACAGCTGCAGGACTCACTAATTAGGTGACTTTTGAAGGAAAGTGGTCAcattggatttatttatttagtgcttTTAGAGTAAAGAGGGCTGAATAGAAATGAAAAGTGTGGACAccacatttttatgatttttatttatttaaaaaaaattaaaccatgtataatttttatctttacttcacaattatgttgTGTTGGTCAATCACAAAAATGCTAATAGATTACAAGCATGCGCAAGTGTGTAGaaaagtgaaaaagttcaagtggtattaatacttttttaaagctcTGTATCAAGTGGCAATGGCAGTGTGATTCCTCTTCTTGTGACGGGAAGTTAAATTATGCTTTTAGAGACTAACctgctattttatatatttttaattgctgTCACATTCATCATCTTACCCTAATTATTTATACATGGCTAACAAAATGGATTAGCATTCATTTGCAGCAGAGTTATCGAGCTATTGACGATGCTGTGTATAAACGAGCCTCAGCACAAAACACTGTACAGCGTACCACCATCCATCACCCCTGCTGGGCTCTGCGTGCCTCATAATGAATTTTAATAATGTACTTTACAGCGTGCTGTTCCTCagtgtaagagcacattaactgcTTTAAGACTGCTTTAACTGAGACACTTCAGCATAGCTCAGTGTTGTTAGTCGTGTTGCATATTATATCGATGGGTATCTGATCTGTATACTGGTGTAATCAGTCAGAATACTTATAACCACTGTACTTGCTAAAAAAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281246 True 2250 lncRNA 0.36 1 22404280 22406529
TU281247 False 1947 lncRNA 0.37 1 22404583 22406529

Neighbor

gene id symbol gene type direction distance location
fgf6 fgf6,LOC107575219,LOC107656433,LOC107725939,LOC107658909,LOC107583988 coding downstream 3765 22394040 ~ 22400515 (-)
LOC103030564 NA coding downstream 12208 22389756 ~ 22392072 (-)
kdm7a kdm7ab,LOC108442737 coding downstream 284143 22082541 ~ 22120137 (-)
cnot1 cnot1 coding downstream 328241 22053224 ~ 22076039 (-)
LOC103032567 NA coding downstream 361895 22036431 ~ 22042385 (-)
LOC103030249 zgc:77158,LOC108442730,LOC107572640,LOC107732819,LOC107575189,LOC107700881,LOC107686625 coding upstream 863 22407392 ~ 22452031 (-)
c24h12orf4 cunh12orf4,c8h12orf4,LOC107707474,LOC107700900,LOC107732788 coding upstream 53517 22460046 ~ 22477263 (-)
LOC103027701 cecr1 coding upstream 184503 22591032 ~ 22601463 (-)
LOC103027200 NA coding upstream 196097 22602626 ~ 22646944 (-)
LOC103026420 atp6v1e1,LOC107707480,LOC107701013,LOC108269194,LOC107575294,LOC107732807,LOC108442797,LOC102197685 coding upstream 269839 22676368 ~ 22683096 (-)
G207282 NA non-coding downstream 1497 22402373 ~ 22402783 (-)
G207275 NA non-coding downstream 26642 22377120 ~ 22377638 (-)
G207269 NA non-coding downstream 27593 22326902 ~ 22376687 (-)
G207243 NA non-coding downstream 369633 22016600 ~ 22034647 (-)
G207242 NA non-coding downstream 391567 22000241 ~ 22012713 (-)
G207315 NA non-coding upstream 176237 22582766 ~ 22583801 (-)
G207333 NA non-coding upstream 282211 22688740 ~ 22689592 (-)
G207505 LOC108441495 non-coding upstream 300905 22707434 ~ 22709445 (-)
G207506 NA non-coding upstream 305348 22711877 ~ 22735025 (-)
G207511 NA non-coding upstream 337409 22743938 ~ 22745827 (-)
LOC103034681 LOC108436714 other downstream 157167 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 421550 21979799 ~ 21982730 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other downstream 1621296 20677453 ~ 20782984 (-)
LOC103040850 hmgn5 other downstream 1891993 20463703 ~ 20512287 (-)
LOC103040644 LOC108443111 other downstream 2129375 20107097 ~ 20274905 (-)
LOC103035944 mical3 other upstream 478903 22885432 ~ 22956024 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other upstream 813940 23220469 ~ 23412954 (-)
dnajc24 dnajc24 other upstream 1532396 23938925 ~ 24020314 (-)
G207707 polr2c other upstream 2118205 24524734 ~ 24529067 (-)
G207772 NA other upstream 2541602 24948131 ~ 24948851 (-)

Expression


Co-expression Network