CI01000009_13585375_13664189 (CERKL)


Basic Information

Item Value
gene id CI01000009_13585375_13664189
gene name CERKL
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13583450 ~ 13664189 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_13585375_13664189.mRNA
ATGTTTGAATCCCCGTGTAAATCGATAAATGTCCTCAACGCGTGGTCGGAGAGTCAGGAAGAGTTGCGCGAGACTCAACCGGCGTCTCCTCCTCACGGGACGGGAAAGCGAATCAAGATAAAAAAGAAAAAGCGAAAACAGCAGCAAAGCGCGAAACGCTCCGTCTCGGCCCCTCAGTTATGCACCGATGACGACGATCAGGAGCGTAAAGAAACGAAATATAGGCCGGACGAACCGATTGTGAGAGGAATCTTCCAAATCGGGAAAAATAGCCATGACGTGGTTCTCACGGCAACGCGGGTAACATGGACGCCCATTCATCCCGAGACCCCTACAGCTGACCGTAATGTGAGGAAGCAGGAGGAGTATGTGGAGCTGAAGGATGTGTTTGCTGTGAAGGTGAAGCGGCGACGCTCCGTGGGGCAGCAGACGGGCGGGACTCTGCTGGGCATCACACTCTTCCAGTGCAAGAAGAAAGGGCTCAAACTCAAGGACCATGCCATCCACCTCAACAACCTGAGCGTGGACCACTGTGAGACTTGGTTCAAAAGCCTTAAAGAGATCCTCAGCGGTTTTAAGAACCGTCCCAAATCTCTCAAAGTCTTCGTGAACCCCATCAGCCACAAGAAAGAGGCGTACCAGATCTACCTGGACAAAGTGGCCCCGCTCTTCAAGCTCGCTGACATACAAGCCGATGTCACCATCACTAAGCGAAAGGGCCACGCTCTGTCCATTCTGAAAGACTGCAGCTTGGAAGAATATGATGGTGTGGTATGTGTTGGGGGAGATGGCTCTGTGGCTGAGGTGGCCCACGGGTTGCTTCTCCGAGCCCAGATGGACGCTGGGAGGGACACAGATTCCATCTTCACGCCTGTCCAAGCAGCACTTCCTCTCGGCATAATACCAGCAGGTTCTACTGACGTGGTGGCGTGCTCTGTGCATGGAATAAGACGTGCCGTGACTGCAGCCTTGCACATCATCATGGGTCATCATCAGCCTGTGGATGTGTGCAGCTTTAGCTGTATGGGTCGTCTGATGAGGTTCGGTTTCTCTGCCATGTTTGGTTTCGGTGGGCGGACGCTCGCACTGGCAGAGAGACACCGCTGGATGCCACCCAGCCAGCGCCGCGAGTTCGCTCTCATTAAAACACTGGCAAACCTCAAACCTGAAGACTGCGAACTGTCCTTTATAACCAGCAGAGGAACCGAGGATCAGACAAAGTGTTATATGCATGGAAAAACTCTTTCTGTTGTGAAAGGTGAGGATGACTCCTGGCAGACCAGACATGGCCTGTACCTGAATATCAGCATCATGGCTATTCCCTGCCTGTGTTCCATGGCTCCCAGGGGCCTGGCTCCAAACACCAGGCTGAACAATGGCAGTATGGCGCTGATAGTTGTTGACAACACCTCCAGGTCAGAGTTCATCAAGCACTTGAAGAGGTACAGCAGCACAAACAACCAGTTTGGTTTCTCTTTTATTGAGACACACACTGTAAAGGCAGTGAGGCTGCGGCCACGCTCTCAGGGAAGCTGGGCTGACGACGTCTCGGAAGAGAACGAGGAGTGTGATTCAAAAACAATGCCTATCATCTCCTCCGAAGGAACATACCCCTGGAACATTGACGGAGATCTCTTGGAGGTCCCATCTGAGCTCCTGATCAGAGTTCATCCGCAGCTCCTCACACTCTTTGGAGAAGACGTGGAGGAGGCGGAGGAGTCGCCAGTTAAATGCAGCTGTATC

Function

symbol description
cerkl Predicted to enable lipid kinase activity. Acts upstream of or within several processes, including negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway; regulation of apoptotic cell clearance; and retina layer formation. Located in cytosol and nucleus. Is expressed in several structures, including eye; gill; heart; kidney; and optic cup. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 26. Orthologous to human CERKL (ceramide kinase like).

NR:

description
ceramide kinase-like protein-like, partial

GO:

id name namespace
GO:0042461 photoreceptor cell development biological_process

KEGG:

id description
K19602 CERKL; ceramide kinase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_13585375_13664189.mRNA False 1743 mRNA 0.53 12 13585375 13664189

Neighbor

gene id symbol gene type direction distance location
CI01000009_13350460_13383813 NA coding downstream 200706 13350157 ~ 13384669 (-)
CI01000009_13273365_13305127 CWC22 coding downstream 280248 13273365 ~ 13305127 (-)
CI01000009_13233918_13237052 ZNF385B coding downstream 348323 13233350 ~ 13237052 (-)
CI01000009_13161845_13162324 NA coding downstream 423051 13161766 ~ 13162324 (-)
CI01000009_13124087_13152851 ZNF385B coding downstream 432153 13123994 ~ 13158324 (-)
CI01000009_13667246_13668040 NDF1, NEUROD1 coding upstream 2264 13666453 ~ 13668597 (-)
CI01000009_13761020_13794137 PDE1A coding upstream 95921 13760110 ~ 13794188 (-)
CI01000009_13878935_13880850 DUSP19A, DUSP19 coding upstream 212153 13876342 ~ 13880850 (-)
CI01000009_13946619_13952884 NA coding upstream 282310 13946499 ~ 13953721 (-)
CI01000009_13963789_13974296 DNAJC10 coding upstream 298760 13962949 ~ 13974296 (-)
G59363 NA non-coding downstream 257991 13326545 ~ 13327384 (-)
G59292 NA non-coding downstream 313929 13270845 ~ 13271446 (-)
G59274 NA non-coding downstream 360013 13207082 ~ 13225362 (-)
G59275 NA non-coding downstream 378771 13198502 ~ 13206604 (-)
G59280 NA non-coding downstream 400887 13162876 ~ 13184488 (-)
G59457 NA non-coding upstream 16789 13680978 ~ 13681722 (-)
G59473 NA non-coding upstream 36403 13700592 ~ 13787413 (-)
G59472 NA non-coding upstream 135809 13799998 ~ 13819996 (-)
G59470 NA non-coding upstream 162297 13826486 ~ 13864603 (-)
G59489 NA non-coding upstream 219783 13883972 ~ 13931681 (-)
G59097 NA other downstream 1295857 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 4724812 8856310 ~ 8860563 (-)
G55814 NA other downstream 5157363 8425821 ~ 8428012 (-)
G53515 NA other downstream 8080127 5502395 ~ 5505248 (-)
G52828 NA other downstream 9353906 4217420 ~ 4231469 (-)
CI01000009_13975122_13976026 NA other upstream 311199 13975099 ~ 13978614 (-)
G59490 NA other upstream 369375 14033564 ~ 14037873 (-)
G59811 NA other upstream 1198208 14862397 ~ 14887464 (-)
G59941 NA other upstream 1467915 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 1712071 15318811 ~ 15390382 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038096 cerkl coding NC_007120.7 CM002893.2 44094311 ~ 44289636 (-)
bowfin (Amia calva) AMCG00001078 NA coding CM030137.1 CM030137.1 14016104 ~ 14055778 (+)