G207617


Basic Information

Item Value
gene id G207617
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 23971795 ~ 23972789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU281768
GAGAGAAATCGGCAGGGCAGCTGCTGTTTTAGCTGCCGCCGCTGACTCACAGCGAATGCCAATCCTGATCCAATTTCGCCACGCTGGTGGCCTCTTATTCCCCCGTCCAATAATGTGTCTGTTGGAAAAATCCCACTGCTTCAAACCAAGTCTAATCCTGGCTGGAGACCTCATGTCAATCTCGTCCATGAAAAAAgggaaacaaaaagaaaaaccccatatatatatatatatatgatgctATCTGGAagaaagataaaggttaccaggagctatatatcatcgctgtcttatgaaaaacacttatctccttttttatttttgatttttagtacacagacaaactgtctcttacactgacCAAATTTCTTggtgaacggaccaatagaaactcatTTTacgttgacttccattgaaagtttacaagttttttttttcctatctcCTGTAAAAAGGACAGCGTGTAACACATGTCCAACGCATCTCAACATAGACTTCCCAATTGTGCCTGGTGATACTCCTTCATATTTGCCATTAGAATTTGATAGTTAATAGTGTGTTCAGtaacatcccacacattttcaattatAGTACATTCCTGCCAATGTGTCTGACCATGACATAGCATCTCATATCTTCAAGGTAAGCTcctgagatggcagcagtatgtggataaATATTGTCCTATTGAAAGAGTGCACCAACGTAGAAACTTTTTATACCGGAACTGTGGACTCCCCGAATACTTTGAATGAAGAACTTATTAATGTGGAATTGTATGAAATTGGACCCCAGACAATGAAATCAGGCCTTCTGATTATAGCAGCATTATGTgaacgagcattgtcctgttgaaacagGTTGCAGGACATTATTAACAATGTATGGTATGTctaagtgcctgtaatgaagattAAAGGTCGTCAGACACTGTACAAAATTGGTGTGACACTATTTGCTCATTAATTATTGCTTATATAAGTCAAAATTGTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281768 True 995 lncRNA 0.39 1 23971795 23972789

Neighbor

gene id symbol gene type direction distance location
tcp11l1 tcp11l1 coding downstream 305915 23657234 ~ 23665880 (-)
LOC103046977 LOC108410746 coding downstream 316692 23612063 ~ 23655103 (-)
LOC103047696 kiaa1549l coding downstream 369450 23506008 ~ 23602345 (-)
syt9 syt9b,syt9,LOC108410565,LOC107572357,LOC107707488,LOC107686648,LOC107701097 coding downstream 710441 23202018 ~ 23261354 (-)
mpped2 mpped2,LOC108269255,LOC108415426,LOC107572223,LOC107589164,LOC108415121 coding upstream 199500 24172289 ~ 24213659 (-)
LOC103032449 LOC108412069,LOC108268535 coding upstream 438039 24410828 ~ 24416431 (-)
ciapin1 ciapin1,LOC107735894,LOC107682982,LOC106904989,LOC107577787 coding upstream 535448 24508237 ~ 24514730 (-)
LOC103031505 shank2,LOC108411910,LOC107572162 coding upstream 559859 24532648 ~ 24746996 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding upstream 784442 24757231 ~ 24774151 (-)
G207616 NA non-coding downstream 848 23970317 ~ 23970947 (-)
G207604 NA non-coding downstream 68651 23902914 ~ 23903144 (-)
G207557 NA non-coding downstream 442659 23528435 ~ 23529136 (-)
G207551 NA non-coding downstream 681767 23247533 ~ 23290028 (-)
G207552 NA non-coding downstream 728522 23241744 ~ 23243273 (-)
G207618 NA non-coding upstream 495 23973284 ~ 23973564 (-)
G207623 NA non-coding upstream 6920 23979709 ~ 23980351 (-)
G207639 NA non-coding upstream 224672 24197461 ~ 24200432 (-)
G207692 NA non-coding upstream 470487 24443276 ~ 24496664 (-)
G207693 NA non-coding upstream 473477 24446266 ~ 24450538 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 558841 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 1015771 22885432 ~ 22956024 (-)
LOC103034681 LOC108436714 other downstream 1724682 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 1989065 21979799 ~ 21982730 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other downstream 3188811 20677453 ~ 20782984 (-)
G207707 polr2c other upstream 551945 24524734 ~ 24529067 (-)
G207772 NA other upstream 975342 24948131 ~ 24948851 (-)
usb1 NA other upstream 1278446 25251235 ~ 25260167 (-)
G207903 NA other upstream 1344213 25317002 ~ 25352674 (-)
G207940 NA other upstream 1619842 25592631 ~ 25733304 (-)

Expression


Co-expression Network