G207707 (polr2c)


Basic Information

Item Value
gene id G207707
gene name polr2c
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24524734 ~ 24529067 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU281888
TCCAAACCACTGGGAATGGCTTTGCTTACATCTTCACAGATTAATGATTCAGAAAATTTCAAAAGATTTCCCGCTGATTCACTAAAACAAAAGATCCTAATCATCTCTGCGAGAAGCTGCCATCCAGCAGTGAGGAAAGGCTTGCTGGGTGCTCAGACTGCTAATTCAGACACTGCACTGATAACTACTTCACAGAATCATGCGACAAGTGTTTAACTAATAAGGCAGAAAACAGAGCGTACCATTCCTCAGGGCGGGGGTACACAGTGTGTCTCAGTGCGTTATCTGGGTCATACTCGAATGCCACCCCCGCTGTTGGATTCCACTTGGCGTGTTCCTTCCCGAAGCCCTTCTTGGCATATGCTCTGAGGCGCAGCTCTTGGCCCTTTCGAAGCTTCACCAGCAGGATGTCATCCTGCTCCACATAGTCATTAGGATCATTATCTCGACTTCTGGAGGTGACAGGAATGACTCTGGGGTTGTTCGACAACAGATCCCGTGAAGTCACGTGACGCGTCTGATCTTCTGTGCACCTTACATCCAAAGTGAGTTCAACAGAGCACTCTGGGCAGAAATCATCACACGTGCAGTCCCTTGAGTACTGCATCTTGTCAACTATGTCATCACTGGTAAGAGGTATGAGTCCCACTCTGTGTGCGATGAACTCATCATGGAGCACTGAAGAGTTGGCATCGATCTGGATCCAGTCGATAGCAATTGTTGCAACTTCGGACATGAACACACGCCGAATAGAGTTTGCAACCGCTAAATCCGTATTCTCGATCACAAACTTCACATTTTCGTCCGATAGCTCTGTGATTTTGACGGTGGGCTGGTTGGCGTACGGCATGCTGAGAGCTGGAGTTCAGTATGACACCGGTAAAGATTTAGAACGGAGTTTAACAGcgagtaaatactgtataatccaGCGCTGCTGCAGCCCGCCcgcacagcacagcactgaaCACACTGAGCCGAGT

Function

symbol description
polr2c Predicted to enable protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2C (RNA polymerase II subunit C).

NR:

description
DNA-directed RNA polymerase II subunit RPB3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281888 True 980 TUCP 0.48 7 24524734 24529067

Neighbor

gene id symbol gene type direction distance location
ciapin1 ciapin1,LOC107735894,LOC107682982,LOC106904989,LOC107577787 coding downstream 10004 24508237 ~ 24514730 (-)
LOC103032449 LOC108412069,LOC108268535 coding downstream 108303 24410828 ~ 24416431 (-)
mpped2 mpped2,LOC108269255,LOC108415426,LOC107572223,LOC107589164,LOC108415121 coding downstream 311075 24172289 ~ 24213659 (-)
tcp11l1 tcp11l1 coding downstream 858854 23657234 ~ 23665880 (-)
LOC103046977 LOC108410746 coding downstream 869631 23612063 ~ 23655103 (-)
LOC103031505 shank2,LOC108411910,LOC107572162 coding upstream 3581 24532648 ~ 24746996 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding upstream 228164 24757231 ~ 24774151 (-)
LOC111195752 LOC108428077 coding upstream 250346 24779413 ~ 24788023 (-)
LOC103044011 NA coding upstream 284263 24813330 ~ 24830963 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding upstream 375503 24904570 ~ 24910773 (-)
G207705 coq9,LOC107707431,LOC107099699,LOC107589199 non-coding downstream 3985 24517463 ~ 24520749 (-)
G207702 LOC108411915 non-coding downstream 16791 24506149 ~ 24507943 (-)
G207692 NA non-coding downstream 28070 24443276 ~ 24496664 (-)
G207693 NA non-coding downstream 74196 24446266 ~ 24450538 (-)
G207639 NA non-coding downstream 324302 24197461 ~ 24200432 (-)
G207706 NA non-coding upstream 1658 24530725 ~ 24577606 (-)
G207763 NA non-coding upstream 283587 24812654 ~ 24812952 (-)
G207767 NA non-coding upstream 362666 24891733 ~ 24892263 (-)
G207768 NA non-coding upstream 368235 24897302 ~ 24946528 (-)
G207781 NA non-coding upstream 433505 24962572 ~ 25045617 (-)
dnajc24 dnajc24 other downstream 504420 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1111780 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 1568710 22885432 ~ 22956024 (-)
LOC103034681 LOC108436714 other downstream 2277621 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 2542004 21979799 ~ 21982730 (-)
G207772 NA other upstream 419064 24948131 ~ 24948851 (-)
usb1 NA other upstream 722168 25251235 ~ 25260167 (-)
G207903 NA other upstream 787935 25317002 ~ 25352674 (-)
G207940 NA other upstream 1063564 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 1390153 25919220 ~ 25938032 (-)

Expression


Co-expression Network