usb1


Basic Information

Item Value
gene id usb1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25251235 ~ 25260167 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282150
GGAACTCCTCTGAGCATATGCTGTTGAAGAGGGACTCCTGACAAGGAGACACTTAACCTTTTGTTTTCAGCGTGAGAATTTCAGCTTCTGTCTGATTTAAGCTTTTGTATTTTCAGCTTTTTAAAGTGAAATTTGCTGAAGACAGATTTTTTAGTTCTGctgtacttgttttttttttttttacccaaaaacTCGTTTTTGTTTTGCCGGTAAAACATCTGTCAGGCTTGTTGGAGCCTTTAAAATAGAAACAGCAGGTTAGTAGGTTAGCTGTATAATCTGcagctctgataaaaaaaaataataaaaaaaactactgctGAGTTATTACTGAGGGAGGTCATAAGAAAGGTGAAGGAGAATTATGCTGGTTAAttacagcagcagctctgaAGAGGAAAGTGAAGATGTCGCTGGACGAAGCAGAAAGCGTCAAAAAACAAATGGCAGCGATATCAGTCCCCATTATAAGAAAAGGGAATGCTCAAGAGGGAAAGATAACATGGAGAACAGGCATGTTGCTTCACTG
>XM_022683873.1
AACAAGCAGCATCCACAACACAGCGCACCGGAACCTTTAATATTTTGATCCgaaatttttcgaagaataactaaTTTCTTGTTGCGTTTATGAATTAATAATGTCAAAAAGCTCTAGGATggccttttcttatttttaccaATATTTAATcgattaatagtaataatagcatGAGCGCGAATCCGAAGATATTTACTCTATTAGCTAGAGGTAGCGAAGACTGATTCATGAGCTTGTTTGATAAgctaaaacatttaatagttgtttctttaaataatttCGCGTTTCTgtccattatttgtttttttttttttatcacttattGGGGTAGGTGGAACTCCTCTGAGCATATGCTGTTGAAGAGGGACTCCTGACAAGGAGACACTTAACCTTTTGTTTTCAGCGTGAGAATTTCAGCTTCTGTCTGATTTAAGCTTTTGTATTTTCAGCTTTTTAAAGTGAAATTTGCTGAAGACAGATTTTTTAGTTCTGctgtacttgttttttttttttttacccaaaaacTCGTTTTTGTTTTGCCGGTAAAACATCTGTCAGGCTTGTTGGAGCCTTTAAAATAGAAACAGCAGGTTAGTAGGTTAGCTGTATAATCTGcagctctgataaaaaaaaataataaaaaaaactactgctGAGTTATTACTGAGGGAGGTCATAAGAAAGGTGAAGGAGAATTATGCTGGTTAAttacagcagcagctctgaAGAGGAAAGTGAAGATGTCGCTGGACGAAGCAGAAAGCGTCAAAAAACAAATGGCAGCGATATCAGTCCCCATTATAAGAAAAGGGAATGCTCAAGAGGGAAAGATAACATGGAGAACAGGGTCATTAGTGACTGTGCAGGAGAGATTGTAACTGGTCAGGCATCTCGCCTTCCCCTGCCCTCCACCCTGCTGGACATGTTTCAAGATACAGAAGAGCAGCACGTGGATGACTGTGTGCAGCATGGAGGACGGCAGCGGTCCTTCCAGCACGAACGTGGCAACTGGGCCACTTACGTTTATTTGCCATATGAGCCTGAGGACGTGTTCCTGGAGTTGCTAGAAGAGCTGAGGGTCTGTGCTGAAGCTCATGGTGTCTCCTTCACCTTGGCAGAAGAGTTCCATGTCAGTGTCTCTAAAACAGTGGTTCTACGACACCACTGGATTCAGCCAGCGGTGCAGTCTTTGCGCTCTGGCCTGGCACAGTGCAGAAGTTTTGTATGTCTGGCAGATAAGTTGAAGGTGTACTGCAATGATGAAAAAACAAGGACTTTTCTCGGGATGGAAATCTCGACAGGCTGCACACAACTACTGGAGATAGTGAAAAGAGTGGACCAGACCATGCAGGAGTTTAACCTCAGCACTTTCTACAAGGATCCATCGTTTCATGTGAGCCTGGCCTGGTGTGTTGGTGATTTCACTGAGAAACTACAGGGTGCATGTTTATCAAAGTTGCAGAATCTGGTGGATGGTCATGAAGATGGACCCTTTCAGTTAAGGTTGAATTTTTTCAGGTCACTGTTATTCTGCTCAAGTCAAGATTTATTCCTCACCTTCAGGAGCTTGTACAGTCATCACTTTTGTCTACCTGAGAGCAAAACCTGTCTTACAACTCCATACAACTCCAAGgaaaAATTGAGACTACAtcacaacaaaccatgtgagaaCATTCTCTTCACTTATCAGGTCAGACCTGTCTTGTGTTCTAGACTAGTGCATATTTCTGTGCAATTTCATTTTGGAGCAATTGCGGCAAAGAGGGTGTTTGTTCaGAATATGGTTTAAAAGCTAAAACACTCTATACCACATGCTGCACTGCAAATATAATCTACTACAGTAAAATCTCTCATTTAAAA
>XM_022683874.1
AACAAGCAGCATCCACAACACAGCGCACCGGAACCTTTAATATTTTGATCCgaaatttttcgaagaataactaaTTTCTTGTTGCGTTTATGAATTAATAATGTCAAAAAGCTCTAGGATggccttttcttatttttaccaATATTTAATcgattaatagtaataatagcatGAGCGCGAATCCGAAGATATTTACTCTATTAGCTAGAGGTAGCGAAGACTGATTCATGAGCTTGTTTGATAAgctaaaacatttaatagttgtttctttaaataatttCGCGTTTCTgtccattatttgtttttttttttttatcacttattGGGGTAGGTGGAACTCCTCTGAGCATATGCTGTTGAAGAGGGACTCCTGACAAGGAGACACTTAACCTTTTGTTTTCAGCGTGAGAATTTCAGCTTCTGTCTGATTTAAGCTTTTGTATTTTCAGCTTTTTAAAGTGAAATTTGCTGAAGACAGATTTTTTAGTTCTGctgtacttgttttttttttttttacccaaaaacTCGTTTTTGTTTTGCCGGTAAAACATCTGTCAGGCTTGTTGGAGCCTTTAAAATAGAAACAGCAGGTTAGTAGGTTAGCTGTATAATCTGcagctctgataaaaaaaaataataaaaaaaactactgctGAGTTATTACTGAGGGAGGTCATAAGAAAGGTGAAGGAGAATTATGCTGGTTAAttacagcagcagctctgaAGAGGAAAGTGAAGATGTCGCTGGACGAAGCAGAAAGCGTCAAAAAACAAATGGCAGCGATATCAGTCCCCATTATAAGAAAAGGGAATGCTCAAGAGGGAAAGATAACATGGAGAACAGGGTCATTAGTGACTGTGCAGGAGAGATTGTAACTGGTCAGGCATCTCGCCTTCCCCTGCCCTCCACCCTGCTGGACATGTTTCAAGATACAGAAGAGCAGCACGTGGATGACTGTGTGCAGCATGGAGGACGGCAGCGGTCCTTCCAGCACGAACGTGGCAACTGGGCCACTTACGTTTATTTGCCATATGAGCCTGAGGACGTGTTCCTGGAGTTGCTAGAAGAGCTGAGGGTCTGTGCTGAAGCTCATGGTGTCTCCTTCACCTTGGCAGAAGAGTTCCATGTCAGTGTCTCTAAAACAGTGGTTCTACGACACCACTGGATTCAGCCAGCGGTGCAGTCTTTGCGCTCTGGCCTGGCACAGTGCAGAAGTTTTGTATGTCTGGCAGATAAGTTGAAGGTGTACTGCAATGATGAAAAAACAAGGACTTTTCTCGGGATGGAAATCTCGACAGGCTGCACACAACTACTGGAGATAGTGAAAAGAGTGGACCAGACCATGCAGGAGTTTAACCTCAGCACTTTCTACAAGGATCCATCGTTTCATGTGAGCCTGGCCTGGTGTGTTGGTGATTTCACTGAGAAACTACAGGGTGCATGTTTATCAAAGTTGCAGAATCTGGTGGATGGTCATGAAGATGGACCCTTTCAGTTAAGGTTGAATTGTCACTGTTATTCTGCTCAAGTCAAGATTTATTCCTCACCTTCAGGAGCTTGTACAGTCATCACTTTTGTCTACCTGAGAGCAAAACCTGTCTTACAACTCCATACAACTCCAAGgaaaAATTGAGACTACAtcacaacaaaccatgtgagaaCATTCTCTTCACTTATCAGGTCAGACCTGTCTTGTG
>XM_022683875.1
AACAAGCAGCATCCACAACACAGCGCACCGGAACCTTTAATATTTTGATCCgaaatttttcgaagaataactaaTTTCTTGTTGCGTTTATGAATTAATAATGTCAAAAAGCTCTAGGATggccttttcttatttttaccaATATTTAATcgattaatagtaataatagcatGAGCGCGAATCCGAAGATATTTACTCTATTAGCTAGAGGTAGCGAAGACTGATTCATGAGCTTGTTTGATAAgctaaaacatttaatagttgtttctttaaataatttCGCGTTTCTgtccattatttgtttttttttttttatcacttattGGGGTAGGTGGAACTCCTCTGAGCATATGCTGTTGAAGAGGGACTCCTGACAAGGAGACACTTAACCTTTTGTTTTCAGCGTGAGAATTTCAGCTTCTGTCTGATTTAAGCTTTTGTATTTTCAGCTTTTTAAAGTGAAATTTGCTGAAGACAGATTTTTTAGTTCTGctgtacttgttttttttttttttacccaaaaacTCGTTTTTGTTTTGCCGGTAAAACATCTGTCAGGCTTGTTGGAGCCTTTAAAATAGAAACAGCAGGTTAGTAGGTTAGCTGTATAATCTGcagctctgataaaaaaaaataataaaaaaaactactgctGAGTTATTACTGAGGGAGGTCATAAGAAAGGTGAAGGAGAATTATGCTGGTTAAttacagcagcagctctgaAGAGGAAAGTGAAGATGTCGCTGGACGAAGCAGAAAGCGTCAAAAAACAAATGGCAGCGATATCAGTCCCCATTATAAGAAAAGGGAATGCTCAAGAGGGAAAGATAACATGGAGAACAGGGTCATTAGTGACTGTGCAGGAGAGATTGTAACTGGTCAGGCATCTCGCCTTCCCCTGCCCTCCACCCTGCTGGACATGTTTCAAGATACAGAAGAGCAGCACGTGGATGACTGTGTGCAGCATGGAGGACGGCAGCGGTCCTTCCAGCACGAACGTGGCAACTGGGCCACTTACGTTTATTTGCCATATGAGCCTGAGGACGTGTTCCTGGAGTTGCTAGAAGAGCTGAGGGTCTGTGCTGAAGCTCATGGTGTCTCCTTCACCTTGGCAGAAGAGTTCCATGTCAGTGTCTCTAAAACAGTGGTTCTACGACACCACTGGATTCAGCCAGCGGTGCAGTCTTTGCGCTCTGGCCTGGCACAGTGCAGAAGTTTTGTATGTCTGGCAGATAAGTTGAAGGTGTACTGCAATGATGAAAAAACAAGGACTTTTCTCGGGATGGAAATCTCGACAGGCTGCACACAACTACTGGAGATAGTGAAAAGAGTGGACCAGACCATGCAGGAGTTTAACCTCAGCACTTTCTACAAGGATCCATCGTTTCATGTGAGCCTGGCCTGGTGTGTTGGTGATTTCACTGAGAAACTACAGGGTGCATGTTTATCAAAGTTGCAGAATCTGGTGGATGGTCATGAAGATGGACCCTTTCAGTTAAGGTTGAATTGTAAGGAGCTCCGCTGCAAAACAGGGAATAAGGTCTTTCTGTTCCCTCTGCTGTGACACATTataattaatatgcatttagaaatattttactCTAACAATCTTTAAATGCACTTTGAACACCTGGATTTAAATAGTAGCTTTTGAGAAGATGTTATGAAAAGATggttaatatttttatagtgtaaaataagctattataattatatatatatatatttttttttttttttactttttacaaaaaCTTGAATAAAAACAGAGAAGGATTTTCTACTGTGCACTTACTGACATTATTTTGCTTTGgccaatataatataatacaattttcacagtaaaaaaaaaaaa

Function

NR:

description
U6 snRNA phosphodiesterase isoform X2

GO:

id name namespace
GO:0034477 U6 snRNA 3'-end processing biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000175 3'-5'-exoribonuclease activity molecular_function

KEGG:

id description
K23093 USB1; U6 snRNA phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
TU282150 False 529 lncRNA 0.38 2 25258840 25259834
XM_022683873.1 True 1860 mRNA 0.41 11 25251235 25260167
XM_022683874.1 False 1700 mRNA 0.42 10 25251932 25260167
XM_022683875.1 False 1858 mRNA 0.39 8 25254424 25260167

Neighbor

gene id symbol gene type direction distance location
drc7 NA coding downstream 20224 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 100246 25143991 ~ 25150989 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 340462 24904570 ~ 24910773 (-)
LOC103044011 NA coding downstream 420272 24813330 ~ 24830963 (-)
LOC111195752 LOC108428077 coding downstream 463212 24779413 ~ 24788023 (-)
ccdc113 NA coding upstream 9974 25270141 ~ 25277760 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding upstream 152019 25412186 ~ 25452091 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding upstream 236134 25496301 ~ 25572271 (-)
LOC103040521 NA coding upstream 421063 25681230 ~ 25685611 (-)
LOC111195867 NA coding upstream 832003 26092170 ~ 26095191 (-)
G207874 ckap5,LOC108269026 non-coding downstream 57562 25191237 ~ 25193673 (-)
G207881 ckap5,LOC108269026 non-coding downstream 84557 25153628 ~ 25166678 (-)
G207781 NA non-coding downstream 205618 24962572 ~ 25045617 (-)
G207768 NA non-coding downstream 304707 24897302 ~ 24946528 (-)
G207767 NA non-coding downstream 358972 24891733 ~ 24892263 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding upstream 19198 25279365 ~ 25299692 (-)
G207926 NA non-coding upstream 169837 25430004 ~ 25430323 (-)
G207928 NA non-coding upstream 177882 25438049 ~ 25442155 (-)
G207934 NA non-coding upstream 204374 25464541 ~ 25467095 (-)
G207938 NA non-coding upstream 294080 25554247 ~ 25557367 (-)
G207772 NA other downstream 302384 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 722168 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1230921 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1838281 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 2295211 22885432 ~ 22956024 (-)
G207903 NA other upstream 56835 25317002 ~ 25352674 (-)
G207940 NA other upstream 332464 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 659053 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 729271 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 819597 26079764 ~ 26086504 (-)

Expression


Co-expression Network