G207934



Basic Information


Item Value
gene id G207934
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25464541 ~ 25467095 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU282214
ttAATGTTATGATGGTTATAGCTGTTTTGGTGATGAGGAGTAATATTAtgagtggtgatgaagatgttAAATGTTATGATGGTTATAGCTGTTTTGGTGATGAGGAGTAATATTAtgagtggtgatgaagatgttAAATGTTATGATGGTTATAGCTGTTTTGGTGATGAGGAGTAATATTAtgagtggtgatgaagatgttAAATGTTATGATGGTTATAGCTGTTTTGTTGATGAGGAGTAAGGTGACGATGTTTATAGTGATGTAAGAAATGGTGATGATAGGATGGTGATGACAGTAAAAAGTGGGATAAAGGTAATAGTGATATTGGCAGTGACTGTGTAGTAATCATGGCAATAGTGATTATTATGGTGATGATATtaaagtaagtgagtaagtatataatataatagtgtaTAATGGTTGTGGTTATGGTAGTGCTGATGGTGGCAATAGTATTGAGAATGTTTATAGTGATAATGGTGAGCATTGTGCAGAAGTTGTGGTAATACTGATGATGTTAGTGGTTATGGTTATTGATGGAAATGGTGAGGTGAAGGTTATGACTGTGCAGTAACAATGGTGATGTGGTGGAAGTGATGGCGATAGAGagaatgataatgataatggaaATATTGATGATGGTAATTGTGATGCTGGTGACAGTGGTGATAAATGTGCAGTGGTCATGATGCAGTGATAATACAGATAATGATACATGTGATGcttgatgtggtgaaactgttaGTAAAGAAAGGGATGATGTTAACAGTGATGATAATGGTAAGAAGTCATTGTGATTAATTGGTTGATAGTAATTCTTATGTGGATGTTAATGCAGGTTTGGTGTAGTTGTCATGGTGCCATTCATGGTGGTGATAGTGGTAATAGTGTTAATAATCATAGTGATGATTGTGATGGCTGTGATATTGATGTAATTGATGATATGGCTGATTGTTTGATCGTTGCACGGTAATGATGGTGTTGTAGTGAAAGTAATGGTGTTGACAGGGATGATTGTGACGATGGTGTTAGCAAGAGTGGTGGTGATaatgtgatggtgatgatgttgATAATAGTGATGTATACAGAGGTCATGGTGAATATTGTATTGATAATGGTAATGATAATGCAGTTTTGATGTAGTTAGCATGGCGTTAAtagatgaatgatgatgatgatgatgacagtgATATGACAAGAGTTTTGAAAGCTTGGTAATGTTCTATGTGTGTTAGTTTGCGTGTGTTGTTATTGTGGCAAACAGAAGCAGGTGAGAAGCATGTCTTACATtggtctctttttctgtctttctctctctttctttctttcttctttctttctttctttgtctcttggTTTCACTCTGATAatcactcgcacacacacttttaagGAGGCCAGGGGATTTTTTGGCTCCCAGGGGGCAGCCAGTGGTCTGAGATTACGATGACTCACCAAAgggagagggatggagagagagagggatagatcGCTGCTGAAAATGAGTAGAAAGTCAGATGATGTGAACGCTGTTAAAGGACGAACTGCACTCTATGTGCTGCTGCCGCATCCCAGCAAACCCCAcactcagcagtgtgtgtgtgtgtgtgtgctgctctaTCTGTTTGTGTCAGTGTCAGTGTGTTTGCAGCTTTATGCTGTAGactctgtttttgtgtgtgtgtgtgtgtgtgtgtgagtaattCGGTTTAGTATAGGACGCAGTGTCTTTTCGGCAGTGTCCCTGACACACATCCTCTCCGTCACTAGAGACGCCCAAGGCCTCCTGcctactgtatatgtgtgtgtttgagtgtgtgtgttctgctgttACCGCAGTTCCCCTCTGTCAGGAGACTGAAAGAGCTGAGCGAGGGTACTGGAGATGACAGAAAACTGTACTGAAGATCACAAAGTGTTTCAGGATGGAACCGTTTAGACATAAAACCCCTCCTCTGCTTCCAAAAAGCTTCCGACTAGACAGATTTACCCAACTTCATAGACTGTCTGAAGCTCTAGAAAAATCATACAGTCAATGTAGTGAACATCATATCCATATCCATATCcacatcttaaaaaaacatttcggAAATGTTTTCGTAAAGTTAAAGACATGCACTAGATGTGtgacaaatgcacacacatacagattgtgtctagtttagtttagtagAGAAGGAATACCAGTATAATAAGACTTTCTAGAACAGAGTAACTTAATGAACCTATTGACATCATACCTACTGCCAGGCATCACCTAAACCCCgtccagacgggattagtttctcagggggactgCTATGAAAATtgtttcacacttctactcagtgattaaacagtgatttttttggctttttcagtcacgtgacatcacgtgcagtagctcctccatttccactcactgttgtgtttacgtggatctccgggGAATCACGTGGCCagagtgtaattatggtgcgtggcagtggacaaatagctagtGAGGTGaaaaaactcagagatgtggatcagGACG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU282214 True 2519 lncRNA 0.40 2 25464541 25467095

Neighbor


gene id symbol gene type direction distance location
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 12450 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 186781 25270141 ~ 25277760 (-)
drc7 NA coding downstream 233530 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 313552 25143991 ~ 25150989 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 553768 24904570 ~ 24910773 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding upstream 29206 25496301 ~ 25572271 (-)
LOC103040521 NA coding upstream 214135 25681230 ~ 25685611 (-)
LOC111195867 NA coding upstream 625075 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 629710 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 777153 26244248 ~ 26246421 (-)
G207928 NA non-coding downstream 22386 25438049 ~ 25442155 (-)
G207926 NA non-coding downstream 34218 25430004 ~ 25430323 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding downstream 164849 25279365 ~ 25299692 (-)
G207874 ckap5,LOC108269026 non-coding downstream 270868 25191237 ~ 25193673 (-)
G207881 ckap5,LOC108269026 non-coding downstream 297863 25153628 ~ 25166678 (-)
G207938 NA non-coding upstream 87152 25554247 ~ 25557367 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding upstream 108973 25576068 ~ 25582312 (-)
LOC111195755 NA non-coding upstream 385810 25852905 ~ 25855561 (-)
G207964 NA non-coding upstream 426045 25893140 ~ 25894477 (-)
G207965 NA non-coding upstream 436812 25903907 ~ 25917560 (-)
G207903 NA other downstream 111867 25317002 ~ 25352674 (-)
usb1 NA other downstream 204374 25251235 ~ 25260167 (-)
G207772 NA other downstream 515690 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 935474 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1444227 23938925 ~ 24020314 (-)
G207940 NA other upstream 125536 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 452125 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 522343 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 612669 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 619556 26086651 ~ 26088415 (-)

Expression



Co-expression Network