G207938


Basic Information

Item Value
gene id G207938
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25554247 ~ 25557367 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282218
agtaATATACTTGATCATTTAaagtaattattaaaatgtaatgtatagtGGTAACTGAAAAATGAATAGTatatactgaatgattcatatgGAATATATGATTATTAGTTatcactaaataattcatagtggatacttcATTCACAATTCATAAGTTATACttcatactgaataatttgtagttgttagtaaataatttatagtggtaATTGAATAACTTCTAATAAACACTGATTCATTTTTAGCATTATTGCATAATTGCTAGAAGTCATAGtgaatatcatatttttcgTAATTACTAAATAATGAACAGTAGATACTGAAAACTGCATATTTAAAGTGCAACCTAAGTAATTCATACTGTATTCTCAACAATTAGTAGTGAATAGTAAAAGTGAATACTAAATCATTACATATTACAACCTGAGTAATATATCTTATGCTGTAACATGCTGATGCTGAACAATTAATGCCTGATAATCCATATACTCTGTGTATgttatactaaatactgaataatttaaagtagatattgaacaattcatagtggataacGAACAATTGACACTAATAATTATTAGTACATCATAAGTAATTTATATTCAAAATGAATCATACAATTGGATAAAGAGAATTTCATATTGAATACTAAACAACTCATAATGGATGCTGAACACTTAATAACACATCCCcagtaattaattataattactgaataattcacaagGGATCCTGAACAATTCATTATGGATGTTTaacaattaatgcaaaaaaattaaaaacacctcCTCAGTAATTGTTACAAAGTATTTAATAATCTTTAGTGGATATTGATCAATTCATAATGGAAGCTGAACTATTATTGCAAACAATTAATAACACATCctcaataattcatagtgaaaactgaataattcatagtggatactgaacaatCCATAATGAATGCTGAACTATGAATGTAAACAATTAATAACACATCCTCAGTAATTcatactaaatactgaacaatttgttgtgaatactgaacaattcataatgGATGCTAAACCATTAATGCAAACAATTAATAACACATACTCAATGATTCATAGTgaaaactgaataattcatagtggatactaaacaaTTCATAATGAATGCagaacaattaataaaatatccTCAGTAATtcatactaaatactgaataatttatagtggatactgaacaattcatagtggatgcttAACCATTAATGCAAACAATTAATAACACATCCTCAATAATtcatactaaatactgaataatttgttgtgaatactgaacaattcatactgGATGCTGAACAATTAATGCAAACAGTTAATAACACATCctcaataattcatagtgaaaacagaacaattcatagtggatgcttAACCATTAATGCAAACAATTAATAACACATCCTCAGTAATtcatactaaatactgaataattcatagtgaatactgaacaattcatagtggatgcttAACCATTAATGCAAACAATTAATAACACATTCTCAGTAATtcatactaaatactgaataattcattgtggAAACAATGTAGTGGAAACTGAACAGTTTTTATTAGTATAAAGTTCTTAGTGAGTATTTCACTctaaacactgaataattcatacttgatactaaataattcataccaGATACTTAATAATAGTTTCTCAATAACAGGtcttaaaaatattattgagaAACAAGTGGAGGATGCAGGAGTTTATTATAGAAACAGAGTGGACTGGTACTGTGGTGCTGCTGGCTAAAAACAGTAAGTAAGGGAAATGTAGCAGCCAGTGGAGGAGTAGAGCTGAAGCAGTGTCAGAAATAGCCGAGGGAAGAGTGTATAGAAATGtagaacagtgtgtgtttaattagAGCTCTGCAGGATCTCAGTGTACGAGTATCCATACGTCCCTACTGACTGAACATCACTACCtaccctttacacacacacacacatgcactacATACATGTCATACTGTAAACTAAAACACAGACGAAGATTCATACACCCCTACTGACTGAACATCACTACCTACCCTCAgctctacatacacacacactacattcacacacacacacactagggctgcacgatattggaaaaaactaTTTTCGACGATATAGATCGCAATATTAACagaattaaacaatgcagggcccatgacatcaccagccccgcccccacctgcgCGCTGTCTGGCGTCCGggccaatcaagagctgagtcagtgccgagcactcaaaacccgaggaaaacagcaaaacaacagtaatcagccctttaatcaggcatttttCAATGGCTTTTTTAATGGTAAATAAGACGTTTTTCTGgcattaaaagcatgaattcagctgttactggaaatatctgcactgcaaaactgtgctggactgaggtgcacagctttcgacacatgctcacgtttacaagcacgtgcccaaccatgtggatggaggccatgcggttacctcgtgtttacttcTGCTCCCCCCTCGTGCTTCGCAGGCAGCAGCatcctgtcactcacacagacacagagacagcgctgtgtatctacttcttgtgtcaagtaTCAGAACGTTGCAACATGACAACATGATTGAATTGCtttaagtgacattgcacgtcctgcgatctgactattgcgcatgcgcacactgcgatgatgatgcttaaacgatatatcgtgcagccctaacacacacgctatatacacacacgctacatacatgtaacactataaacaaaaacacagacgGGTATCCATACACCCGGGTAGTTGAGGAGACATGCATGACGCgcacacaagtacacacacacacacacacacacatgagagTGCACTGCACTGCAGGACTGAATGAGGGCGGTTGTTGCTGTGACAACCTCGTCGCTTGTCACGGCTGTTTTCAAGATGCACGCTTGCATGCGGCCTCAAACCAGCCAGCCTCccccaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282218 True 2996 lncRNA 0.35 3 25554247 25557367

Neighbor

gene id symbol gene type direction distance location
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 102156 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 276487 25270141 ~ 25277760 (-)
drc7 NA coding downstream 323236 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 403258 25143991 ~ 25150989 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 643474 24904570 ~ 24910773 (-)
LOC103040521 NA coding upstream 123863 25681230 ~ 25685611 (-)
LOC111195867 NA coding upstream 534803 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 539438 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 686881 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 1056495 26613862 ~ 26640223 (-)
G207934 NA non-coding downstream 87152 25464541 ~ 25467095 (-)
G207928 NA non-coding downstream 112092 25438049 ~ 25442155 (-)
G207926 NA non-coding downstream 123924 25430004 ~ 25430323 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding downstream 254555 25279365 ~ 25299692 (-)
G207874 ckap5,LOC108269026 non-coding downstream 360574 25191237 ~ 25193673 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding upstream 18701 25576068 ~ 25582312 (-)
LOC111195755 NA non-coding upstream 295538 25852905 ~ 25855561 (-)
G207964 NA non-coding upstream 335773 25893140 ~ 25894477 (-)
G207965 NA non-coding upstream 346540 25903907 ~ 25917560 (-)
G208008 NA non-coding upstream 449853 26007220 ~ 26013616 (-)
G207903 NA other downstream 201573 25317002 ~ 25352674 (-)
usb1 NA other downstream 294080 25251235 ~ 25260167 (-)
G207772 NA other downstream 605396 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 1025180 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1533933 23938925 ~ 24020314 (-)
G207940 NA other upstream 35264 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 361853 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 432071 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 522397 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 529284 26086651 ~ 26088415 (-)

Expression


Co-expression Network