LOC111195756


Basic Information

Item Value
gene id LOC111195756
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25919220 ~ 25938032 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282294
ctctctctctgcctatATAATGGGGTAGAGAACTCTGAGtctacacacactgctctctctctctctctcctccacagCAGAAGAGTCTtcagtgtctctgtgtgtgaatCAGGATCTTCTGCTAGAATGAGGAGTGGATCTGCTCTGCTGTTGGTGCTGCTGCTCGGCTCTCTCCAGCTCTCCTCTAGTGCTCCTCACGGGACCTCTGTTGCTGACTGCTGTCCCAAACTGACTACAGTGAAGACGATTCCTCTGAGAATGGTGAAGTCTTACACAGAGACACGCAGCGACTGTGCCGTTAAAGCCATTGTACTATTGACTACAAAAGGAAAGACATTTTGTGGGGATCCAGATGCTGAGTGGGTGAAAAGTCTTGTCGCTGCTCTGGACCAAAGAAACACCCCTACCACTGCAAAACCTTTAACTACAAATTCCCCAACTCTCTCCACTGCTAAGCTCTTTAGAGAAGAGTATTGAGTAAAAAAGGAACGAGGTATTGTGTGCATCCAGATGCACATATCCATACGCGGCCGAAACGTCATGTCACTGCTCTGGACTGAAGAAACACACCTACCACTGCAAAACTTTAACTACAAATTCCACAACTCTCTAAGCACCTCAGAGAAGTTCACCCTGATTAACTGATTATCTAATTCTTAAAcacttttttgggttttcattggctgtaagccataatcatcaacaataaaataaataaacgcttaaaatagatcactctgtgtgtaatacatctatataaaacatgagttttacattttgaactgaattactgaatcaCTTACAGAGTGTGATACAGTGACATCGGTTGGATGCctttatttatattcttttacattaaccaatgtaaaaataattattaggaATAAGAATAAGTAAAAGTATTTCACATTAACTACGGTATTGATTGACAGAAATAAAAAGTactatatgtaatatgtaagaCAAACTCTATATATCAAGTGCATTATGCAGCATATTGCTAGTCATGTGACACCTGAAAATGGGTTATCTTCTATTCCTTGTGCACCTGTGTCTGCCAGTGATCTCCCAGCTCCCAGATCATAACTTTGACATGCATATCATGCttcacagtatatttatatatatcttaatatggtttatatatcacacagacagtcatcctgcatcagaagaatgtttatttcctttattcatgactggatttactgtatttatgttcctTTGCATACAAAAGCCAAAATAAAGGCAGCGGCACAGTTAGGCGACTGCTCTCCCCACAGATGGCACCTGCttacgactttaatcttgtaatattatgattttcatattgtaatattatgactttattctcataatactATGACTTTATAATCTTAATATTACAACTTAATTCTCAAAGTCACCTCAAAGTGGCTCTAAAATGctgtaataaaaacacattattatgcATTTTGACAAAATATAATGTTTAGTATTCCAAAATGCAATAATctagttttaaatttacaagAAAATAATTTCAGAGAGATTATAGTAAATTAGACATTTGTCTAAATGATAGTAGAAGTGCATGCTGTCAGTTATTGTGAACGCTCGTTCAGTTTAGCAACGCGACTCTTGACCCAATCGGCATCTGGATCCACACAGAACTTCCTTCCTGCTCTAGTGTTAAACCTGCAACAGAAGATAAAGTATAGTTAAAAATATACTGactttaaaatttactttaaaacatatGAACACATAGAAATAACAAACCATCATGTCAGGAACTAGagttaaaactattttaaagtgGCTAATATGgaacatttacagaaaaaaatattattgtgcaCCATCTCACCATCACCGACTAAacttatttaagtaaaatattcatttaataatttaagtaaaatataaaattattcattaatttatgcCCACAATAACAGCTAATAGAAGAGTGCGTGGGATCATTTCTACTCACACAATGGCTTTGATAGGTCTCCACCAGCCTTAGAGGAAACTTCACTGTAGTCAGTTTGAAACAGCAGTCAGCAACCGAGGCCCCTTGAGGATCTGTAAAAATCACAAACATCAGATTAGCACCATCTCACAACACACAGATATGTGATATTTACAGGAAGGTGATTagttctctgctctctctcacaGCGTCACTAATGCAGCTCAGTGTACTGAGTTCACTCACCACTAGAGGAGAGCTGTGTTATTTCATAATTTCTATGCTATTTAAGTAGTATTAATCTAAAACCACCATATAAACGAGAGAAATGCTGATACAGGTCAGAGCTGAGTTCTGATCCGGGTACTGGAAGGATCACAGTCCAGTTTTTGGGGAAACAGAGGGGAGGGCACTATCAGATTACATAAATCCCTTACTGAACACAAAAACAACCTCCAtttataaaatactgaaagggtTTAGCACCTCTAGTGGTCATAAATGGTATGAACAGAAATAGCTCTCAGAATTAAAGATGATTTATTAGACCAGGTCTAATTCACCCGTTAgttatcagtttctctgattttgctatttgtatgtatatatttaagtaaaataaacattattgttttattttataaattaaaaaacaaaaacattgtcatttagagcatttatttgcagaaaatgaaaaatggctgatatgacagaaaagatgcagagcttcagaaatcaatatttaatggaataaccctgtttttttatcactgttttcatgcatcttggcattttctcctccaccagtcttacacactgcttttgg
>XM_022683893.1
ACCCGGAAGAATCTAGTATCCAAAACACAGCTCTGACCTGTATCagcatttctctcttttatatGTACCCGGATCATTGCGCTGAACTGTACTGAACAGAACTCAGCTCTGTCCTGTATCAGCATTTTTCTCGTTTATACGCAGAAGAGTCTtcagtgtctctgtgtgtgaatCAGGATCTTCTGCTAGAATGAGGAGTGGATCTGCTCTGCTGTTGGTGCTGCTGCTCGGCTCTCTCCAGCTCTCCTCTAGTGCTCCAGCTGGGACTGGTGTTGCTGACTGCTGTTCCAAACTGACTACAGTGAAGAAGATTCCTCTGAGAATGGTGGAGTCTTACATAGAGACACACAGCCACTGTGAACTTAAAGCCATTGTACTATTGACTACAAAAGGAAAGACATTTTGTGGGGATCCAGATGCTGAGTGGGTGAAAAGTCTTGTCGCTGCTCTGGACCAAAGAAACACCCCTACCACTGCAAAACCTTTAACTACAAATTCCCCAACTCTCTCCACTGCTAAGCTCTTTAGAGAAGCTCCAGCAGCGGCCCCTGTTCATGACTGCTGTTTCAACCTGACTGAAATGAAGATTCCTCTGAGGATAGTGGAGtctcacacagagacacacagcgaCTGTCCCTTTAAAGCCTTTGTATTATTgagtaaaaaaggaaataagttTTGTGCGGATCCAGATTCTGAGTTGGTCGCTCCTCTGGACCAAAGAAACAACACTACcacagcaaaaccttctataACTACAAATTCCACATCTATCTTCAATATTAAGCTCTTTAGAGAAGATATGCAGCATAGATATGCTCCAGCAGCGGGCTCTGTTGCTTACTGCTGTTTCAATTTCCTTACAATGAAGATTCCTCTGAGGATGGTGGAGTcttacacagagacacacacatactgtccCCTTAAAGCCATTGTATTATTGAGTAAAAGTGGAAAGATGTTTTGTGGGGATCCAGATGCTGAGTGGGTGAAAAGTCTTGTCGCTGCTCTGGACCAAAGAAACACCCCTACCACTGCAAAACCTTTAACTACAAATTCCCCAACTCTCTCCACTGCTAAGCTCTTTAGAGAAGCTCCAGCAGGGGCCCCTGTTCCTGACTGCTGTTTCAAATTTACTGCAGTAAAGAAGATTCCTCTGAGAATGGTGGAGTCTTTCACAGAGACACGCAGCGACTGTCCCTTTAAAGCCATTGTAGTATTGAGTAAAAAAGGAACGAGGTATTGTGTGCATCCAGATGCACATATCCATACGCGGCCGAAACGTCATGTCACTGCTCTGGACTGAAGAAACACACCTACCACTGCAAAACTTTAACTACAAATTCCACAACTCTCTAAGCACCTCAGAGAAGTTCACCCTGATTAACTGATTATCTAATTCTTAAAcacttttttgggttttcattggctgtaagccataatcatcaacaataaaataaataaacgcttaaaataga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282294 True 2780 TUCP 0.36 6 25919220 25938032
XM_022683893.1 False 1478 mRNA 0.44 11 25922581 25933202

Neighbor

gene id symbol gene type direction distance location
LOC103040521 NA coding downstream 233609 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 346949 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 467129 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 641460 25270141 ~ 25277760 (-)
drc7 NA coding downstream 688209 25212565 ~ 25231011 (-)
LOC111195867 NA coding upstream 154138 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 158773 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 306216 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 675830 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 735574 26673606 ~ 26715253 (-)
G207965 NA non-coding downstream 1660 25903907 ~ 25917560 (-)
G207964 NA non-coding downstream 24743 25893140 ~ 25894477 (-)
LOC111195755 NA non-coding downstream 63659 25852905 ~ 25855561 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding downstream 336908 25576068 ~ 25582312 (-)
G207938 NA non-coding downstream 361853 25554247 ~ 25557367 (-)
G208008 NA non-coding upstream 69188 26007220 ~ 26013616 (-)
G208011 NA non-coding upstream 76715 26014747 ~ 26015003 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding upstream 123279 26061311 ~ 26076646 (-)
G208022 NA non-coding upstream 153779 26091811 ~ 26099823 (-)
G208026 uba2,LOC107701803 non-coding upstream 183445 26121477 ~ 26122367 (-)
G207940 NA other downstream 185916 25592631 ~ 25733304 (-)
G207903 NA other downstream 566546 25317002 ~ 25352674 (-)
usb1 NA other downstream 659053 25251235 ~ 25260167 (-)
G207772 NA other downstream 970369 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 1390153 24524734 ~ 24529067 (-)
LOC111195825 NA other upstream 51406 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 141732 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 148619 26086651 ~ 26088415 (-)
LOC111195835 NA other upstream 165455 26103487 ~ 26117632 (-)
G208046 NA other upstream 274026 26212058 ~ 26212841 (-)

Expression


Co-expression Network