LOC111195825


Basic Information

Item Value
gene id LOC111195825
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25989438 ~ 25992494 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282304
CAGAAGGGGAAAATTATTACTGTTTTTGGACAGGAACCATGTGGGTGTTCGCCCACTGCCCTCACTCAATATAAATAACCAGGCACTGGCCAACCATCCAGGACTGGACCCTCCACTACATCTATCTTGTCTTCAGCTAcacttctccatctctctgtccagttctctctccagctccagctctctGTGTGTGAATCGGGATCTCCTGCTAGAATGAGGAGTGGATCTGCTCTGCTGTTGGTGCTGCTGCTCGGCTCTTTCCAGCCTTCCTCTGGTGGTCCTGAAAGCCCAGACCAACAAAACAAAGAGTGCTGTTTTAAACTTTCTCAAAGGAAGCTCCCGCTGAAGAGGATTGTATCCTACAGGCATACAAGTAGCAACTGCCCCAGTAGTGCTGTTATTTTTAAGATGATGTCTGGAAGGTCAATCTGTGTGGATCCTAAAACGAAATGGGTCAACGTTCATATGAAAGAAATGGACCAGCGGAAAACAGCATCCTCAAAAGAAAAACCCACCACACCCTAAACATTTTGGAACCAATCACAGAAAGACTTTGTAATACAGTAGACCTATAGGATGTACTTATGTTGCATTGTAATTCAATAGAAAATACAatgtatttagtatatttactgACATGTGGCATCCCCA
>XM_022684337.1
ATGAGGAGTGGATCTGCTCTGCTGTTGGTGCTGCTGCTCGGCTCTTTCCAGCCTTCCTCTGGTGGTCCTGAAAGCCCAGACCAACAAAACAAAGAGTGCTGTTTTAAACTTTCTCAAAGGAAGCTCCCGCTGAAGAGGATTGTATCCTACAGGCATACAAGTAGCAACTGCCCCAGTAGTGCTGTTATTTTTAAGATGATGTCTGGAAGGTCAATCTGTGTGGATCCTAAAACGAAATGGGTCAACGTTCATATGAAAGAAATGGACCAGCGGAAAACAGCATCCTCAAAAGAAAAACCCACCACACCCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282304 True 651 TUCP 0.44 3 25989438 25992494
XM_022684337.1 False 312 mRNA 0.46 3 25989564 25992281

Neighbor

gene id symbol gene type direction distance location
LOC103040521 NA coding downstream 303827 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 417167 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 537347 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 711678 25270141 ~ 25277760 (-)
drc7 NA coding downstream 758427 25212565 ~ 25231011 (-)
LOC111195867 NA coding upstream 99676 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 104311 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 251754 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 621368 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 681112 26673606 ~ 26715253 (-)
G207965 NA non-coding downstream 71878 25903907 ~ 25917560 (-)
G207964 NA non-coding downstream 94961 25893140 ~ 25894477 (-)
LOC111195755 NA non-coding downstream 133877 25852905 ~ 25855561 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding downstream 407126 25576068 ~ 25582312 (-)
G207938 NA non-coding downstream 432071 25554247 ~ 25557367 (-)
G208008 NA non-coding upstream 14726 26007220 ~ 26013616 (-)
G208011 NA non-coding upstream 22253 26014747 ~ 26015003 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding upstream 68817 26061311 ~ 26076646 (-)
G208022 NA non-coding upstream 99317 26091811 ~ 26099823 (-)
G208026 uba2,LOC107701803 non-coding upstream 128983 26121477 ~ 26122367 (-)
LOC111195756 NA other downstream 51406 25919220 ~ 25938032 (-)
G207940 NA other downstream 256134 25592631 ~ 25733304 (-)
G207903 NA other downstream 636764 25317002 ~ 25352674 (-)
usb1 NA other downstream 729271 25251235 ~ 25260167 (-)
G207772 NA other downstream 1040587 24948131 ~ 24948851 (-)
LOC111195762 NA other upstream 87270 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 94157 26086651 ~ 26088415 (-)
LOC111195835 NA other upstream 110993 26103487 ~ 26117632 (-)
G208046 NA other upstream 219564 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 662949 26655443 ~ 26656184 (-)

Expression


Co-expression Network