G208008


Basic Information

Item Value
gene id G208008
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26007220 ~ 26013616 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282327
TAAAGATCCAGAAGtagattttatttacaaaagcaGACAAGGGGATATACAAAAATCAAAAGGTTGAAAAACGAGAGCAGAGTTATAATaccagaaaaaaagacaagatcAACAAAATTCTTTGAAATGCAAGGATAACCAGAAAAGACGTTGCACTTGGATCCATTGCGAAGACCATATATACACAGAGTAAATGATACCAGTACAGGATACAATAGAACACAGGtgtgcaaaaactaaaactaaatttacattatttacataattttagCTGATTTGACTAAAATGTGCACAGGCAGGCCAGAATTAGAAACAGAATTATCATTGGCCAGAATTCTCATGGTAGACTGGTCTTTTTACCATTTTGCCAATTCAGCAAAAGAAGACTAAGTTGAGAAGTTTTATAAATGTTCATGTATTAAAAAGCttgctgtttttatatataaagtcataatatCGTTTATTGTCTTGTCTCAATATTGTGTGTTAGTATGTTATAGATTCTTTAAAAACCttcttgcatttgcatcctgcctcaaAGACTGAGTCGTTACACTTGCCATGGTCCTAACAACATCAGCTTATAAGATCAGTATGAGCTGAGGAATAAAAACATGaagatttcttacaaataaaaacatattaaattaatttcttaCAGTATGGATGGACATTTATACAGCATTAAACAGCTTTAGCTTGGCGAGCTTTAAGATTGTTTAAGCAGTTCTGATTATTAATAAGCTTCCGTCCAGCATCCACTCCTTCCATGCGTTTCTTGACCCAATCAGCCATCGCATCCACACAGACTTGTTTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282327 True 820 lncRNA 0.34 2 26007220 26013616

Neighbor

gene id symbol gene type direction distance location
LOC103040521 NA coding downstream 321609 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 434949 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 555129 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 729460 25270141 ~ 25277760 (-)
drc7 NA coding downstream 776209 25212565 ~ 25231011 (-)
LOC111195867 NA coding upstream 78554 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 83189 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 230632 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 600246 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 659990 26673606 ~ 26715253 (-)
G207965 NA non-coding downstream 89660 25903907 ~ 25917560 (-)
G207964 NA non-coding downstream 112743 25893140 ~ 25894477 (-)
LOC111195755 NA non-coding downstream 151659 25852905 ~ 25855561 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding downstream 424908 25576068 ~ 25582312 (-)
G207938 NA non-coding downstream 449853 25554247 ~ 25557367 (-)
G208011 NA non-coding upstream 1131 26014747 ~ 26015003 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding upstream 47695 26061311 ~ 26076646 (-)
G208022 NA non-coding upstream 78195 26091811 ~ 26099823 (-)
G208026 uba2,LOC107701803 non-coding upstream 107861 26121477 ~ 26122367 (-)
G208027 uba2 non-coding upstream 109731 26123347 ~ 26124768 (-)
LOC111195825 NA other downstream 14726 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 69188 25919220 ~ 25938032 (-)
G207940 NA other downstream 273916 25592631 ~ 25733304 (-)
G207903 NA other downstream 654546 25317002 ~ 25352674 (-)
usb1 NA other downstream 747053 25251235 ~ 25260167 (-)
LOC111195762 NA other upstream 66148 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 73035 26086651 ~ 26088415 (-)
LOC111195835 NA other upstream 89871 26103487 ~ 26117632 (-)
G208046 NA other upstream 198442 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 641827 26655443 ~ 26656184 (-)

Expression


Co-expression Network