LOC111195762


Basic Information

Item Value
gene id LOC111195762
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26079764 ~ 26086504 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282332
GGTGAAAATAAAGTAAACGGAACAGACGCGGGGCTGAAGTCCGTGACTTTAATAACAAGAGAAGAAAACACTACAGACCTGAAGAGATGAAGaagataagctgtgtgtgtgcggtcCTGGGGCTGGTTCTGCTGATAGCAGTCTCCTCAGTATCCCGCACTGAAGACTCCAATCACCCGACTCTGTGCTGTTTCAACTTTGTGAAATTTAAAATTCCACTCAAAAATATCCTTACAGTTGAAAAGACTAGTTCCGCCTGCCCGATCCCTGGCTATGTGGTTACAACCCCTCGGGGCAAGTTCTGCAAGCAGGAAGATCTTCTAGTTCTTCTAGATTAGATTCAGTGCAGCTGCTTCTACACCACTAATCTGCAGCTCAAAGTGCAGCTAAAATACAGCTTAATATGCTTCTTTAT
>TU282337
TGTTTTAGCATAACCATTTCATCTTTAATcgtaataataatgtacagtTAGGCAGACAGAAgagacaataataaaatgaagaaaaaaaaaagcaatacacTGAAAGCcgtatacatataaaaaaaagtaaaaaaaaaaacacacacataaggGGTGGACTTGGGTTTTGGGCTCAGGCATTATGAAAACGTTATGAAAAAGTTTTAGGAATTGTTAAAGAAAAGTTTTGGAATGGTTTTGCGAGTCATAAGAGAAAGATGAAGGAATATTTTGGGAAGGAATAATGTATCGAAGGGTAAAAAGGATTTCAGAATGGTTTGGGAACATATTGGAAGTTGATAGGAAATGGCTATGGAAAGAACAGAAACGGTTAGAGGTAGACTTGGGGAAAGGTTTGGAAATGATTAGGGAAAGATCTTGGGAAGGTATAGTGGGAGGTTTGGGAATGTTTAGTAAAGTTTGGGAATGATTAGGGGAAGGGATTAGGGAAATTCTGATAATGGTTATAGAAAGTTACTGAAAGGACTGTGAATATTTAGAGAAACATTTAGGAATATCAAAGGAATGGTTTTGGGAATGGTCAGGGAGTGTGTGGAGAATGATTAGAGTGAAAGGTTAACTCTGAACTCTGCTCTATCCAGAGTTCTGAGCGGTGGCTGTAGTGACTTTATATCACAGCCGGAAGAACGAAAACTTTGAGCTTGCATAGTGAATGACTGTATTTGTGTGTCTGCATTTGTTTTACTTCCTCTTGGTTGTGTTAAGAGTTGATGTTAGTGGCtaaatgtgtatgtgtttgtgtgtgtgtttgtgtgtgtgcatgcgtgctAATATGTCCTAATATGTACTATTTGGCCTGTGGTAGTCTAGTCTTAGGGCCTGTTAGCTGTAAGCTTGGCTTGTAGAAACAAAATGAGCTAAAATATTCAATGTGTTGAGCAGAGTGTGTCCAACAAGTTTAGCAGCCTGGTATTAAATTGAGTGGGATGGACGCTTCCTCCAGTCTCACAAACAGAAAGATTCCTGATCCAGGGTCAGACTGTTACACTACCCACAGTTACCAATACTCAGCATCAGTGCAGTACTCTAATATACTGCACCACTAGCTGGTGTCTGCATAGCAAATAGATACAGGCTACAGAGAAAACTGCACTGAACAAAGTGCTGCACTAGATGAATCTGGATTATGTTTtacttataaaacatattaacttAACTCCACTAAtgacagtaagtaagtaaacgGAAAGGGATGTAAAAATGATGCTGATATAGATCATTCTAGAACATAATTTCTAATTTAATAACTTACTGAAGTTCTTAAAGACTgaattattgaataaaacatgtCTAgcttacagtattttagtatacAGTATCTACACTGTATAAGGCGTACAGTAACTAATACtattataaatacaaatttataGAACATTTATACACAAAGCAGTGGTTTTACATCAGTGTTGTCAACTTGTGACAATCTAGCTGtacttatattaaattaatttatagttattatattatagctaaatcaggtgagctgatgatcaaattaattaaatacatcCAAATGAGTGCTTGCAACATATGAAGTAAGTAATCTTTGTTTcttttactgcatttttcaTTATCTTTACCTGCATCTGTTctggttaatgttaatgttatggctactgGTAATTTGTATAGATAGTAGTATGCATTAGTGATAAAATCACTAATTAACAACAAACAAGGTATATGTACTGTAGCAATAATAACCTTTAAAGATAAGctttactactttactacaAGATCAGCAATCTTCATGTGAGGAGAACCTGGAGGAAACATCTCATCATCCTCAATAATGAGGGTCATGGGGGTTAATGGTAAAATGGGGGCACAGAATAAGAGTAATCACTCTACAGATAAAGAAACATAAATGGggaaaaacacaaatagaaaaaaaagaatacatgcCCTTTCAGTTTGTGCTGTTTTGCAACAGAATCAGGGCAAATGGAACCGTTACATAAGTAAGTATCAACAGTACTGTCATCATAACCATCCACATCAGTCATCACTGTTATCATTGAAGACATTTGGACACCCATGCTGATGGTGCATTACACTATGTATTATAGGGACACTAATATTTGAATACATATTATCCAGCCagggtttattattattatttttattattattattattattattattattattattagaacgGCAAAATGAATTTATTACAGTTGAATCAGATGTGCTTTAACTGTACAGAGATGTGTTACTTGGGGAGGATCTTCAGACACTATCTCATGACTATATTCATGACCCcctattaaaaaacacacactcacacacacacacacacacatatacactcagacacacacactcacacacacaaaccagagACACATGTAACTGTATCATCAATCTCCGATAATACCTCCTCTTACCATCTAACCCTTACATTACAGACCACAGTCCCACTCAGCccatatttggtaaaattaatacagcTTTATTCAACCGCACTAAACCCTTTAACTCACGTTCACAGCCACATCCTCTACCTTCTGATTCAAATCATCTCTCAATATGAGCCAAACCCTTGAGAAAAACCTGACGAAAGTGTGTGAAAGCGGCTGTAAACAAGCCTGCTATGGTTAAAGCAGTCGCTCCTATAAAGCTATAAGAATATATTTCACACGgatgtcttttttgttttacataaaatgcaatatacatacatatatatttttttcaattttacaaATCACATATTctacctttaataaaataaaatatgacacAAAAATCTGACACATTCACTGTACATTTCACTGCTTTATCACTCACACACTATAG
>XM_022683900.1
GTTACTTACCTGGAAAGAAACTGCACTTGCACAGTTGTCCAGCATTACTGACCAAAAGTTTGTGAAATATAGcacgttttttttgtgtgtgtgtaaataagcAATCCTTTAAATCCTGTAAATCCTGGACATTTGGGCCACCGTAGGTACGTGATGTTGGACTCACGCGAGACCGGAGTTCCCAGAAAGTTGGTGAAAATAAAGTAAACGGAACAGACGCGGGGCTGAAGTCCGTGACTTTAATAACAAGAGAAGAAAACACTACAGACCTGAAGAGATGAAGaagataagctgtgtgtgtgcggtcCTGGGGCTGGTTCTGCTGATAGCAGTCTCCTCAGTATCCCGCACTGAAGACTCCAATCACCCGACTCTGTGCTGTTTCAACTTTGTGAAATTTAAAATTCCACTCAAAAATATCCTTACAGTTGAAAAGACTAGTTCCGCCTGCCCGATCCCTGGCTATGTGGTTACAACCCCTCGGGGCAAGTTCTGCAAGCAGGAAGATCTTCTAGTTCTTCTAGATTAGATTCAGTGCAGCTGCTTCTACACCACTAATCTGCAGCTCAAAGTGCAGCTAAAATACAGCTTAATATGCTTCTTTATATATTCATACACACAagcttaatataataaaattggaatattttttcagtatgtaccaatgcttattttattatgcagattaaaataaaaaagcatggcCTGAATAAGAGCTGAAAGATTGtctttatactaaataaaatcatattttatgaGAGAGCTGGGTTGCAGATGTTGGTAAAGGTGTGCATTTACATACAGAACCACAAAACCAGaggaaataaaaacagacaagaGATAAGAATGACGCACAAACATGTTTTAGCATAACCATTTCATCTTTAATcgtaataataatgtacagtTAGGCAGACAGAAgagacaataataaaatgaagaaaaaaaaaagcaatacacTGAAAGCcgtatacatataaaaaaaagtaaaaaaaaaaacacacacataaggGGTGGACTTGGGTTTTGGGCTCAGGCATTATGAAAACGTTATGAAAAAGTTTTAGGAATTGTTAAAGAAAAGTTTTGGAATGGTTTTGCGAGTCATAAGAGAAAGATGAAGGAATATTTTGGGAAGGAATAATGTATCGAAGGGTAAAAAGGATTTCAGAATGGTTTGGGAACATATTGGAAGTTGATAGGAAATGGCTATGGAAAGAACAGAAACGGTTAGAGGTAGACTTGGGGAAAGGTTTGGAAATGATTAGGGAAAGATCTTGGGAAGGTATAGTGGGAGGTTTGGGAATGTTTAGTAAAGTTTGGGAATGATTAGGGGAAGGGATTAGGGAAATTCTGATAATGGTTATAGAAAGTTACTGAAAGGACTGTGAATATTTAGAGAAACATTTAGGAATATCAAAGGAATGGTTTTGGGAATGGTCAGGGAGTGTGTGGAGAATGATTAGAGTGAAAGGTTAACTCTGAACTCTGCTCTATCCAGAGTTCTGAGCGGTGGCTGTAGTGACTTTATATCACAGCCGGAAGAACGAAAACTTTGAGCTTGCATAGTGAATGACTGTATTTGTGTGTCTGCATTTGTTTTACTTCCTCTTGGTTGTGTTAAGAGTTGATGTTAGTGGCtaaatgtgtatgtgtttgtgtgtgtgtttgtgtgtgtgcatgcgtgctAATATGTCCTAATATGTACTATTTGGCCTGTGGTAGTCTAGTCTTAGGGCCTGTTAGCTGTAAGCTTGGCTTGTAGAAACAAAATGAGCTAAAATATTCAATGTGTTGAGCAGAGTGTGTCCAACAAGTTTAGCAGCCTGGTATTAAATTGAGTGGGATGGACGCTTCCTCCAGTCTCACAAACAGAAAGATTCCTGATCCAGGGTCAGACTGTTACACTACCCACAGTTACCAATACTCAGCATCAGTGCAGTACTCTAATATACTGCACCACTAGCTGGTGTCTGCATAGCAAATAGATACAGGCTACAGAGAAAACTGCACT

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282332 False 415 lncRNA 0.45 3 26084572 26085450
TU282337 True 2868 lncRNA 0.35 3 26079764 26086504
XM_022683900.1 False 2014 mRNA 0.39 3 26083164 26085641

Neighbor

gene id symbol gene type direction distance location
LOC103040521 NA coding downstream 394153 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 507493 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 627673 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 802004 25270141 ~ 25277760 (-)
drc7 NA coding downstream 848753 25212565 ~ 25231011 (-)
LOC111195867 NA coding upstream 5666 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 10301 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 157744 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 527358 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 587102 26673606 ~ 26715253 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding downstream 3118 26061311 ~ 26076646 (-)
G208011 NA non-coding downstream 64761 26014747 ~ 26015003 (-)
G208008 NA non-coding downstream 66148 26007220 ~ 26013616 (-)
G207965 NA non-coding downstream 162204 25903907 ~ 25917560 (-)
G207964 NA non-coding downstream 185287 25893140 ~ 25894477 (-)
G208022 NA non-coding upstream 5307 26091811 ~ 26099823 (-)
G208026 uba2,LOC107701803 non-coding upstream 34973 26121477 ~ 26122367 (-)
G208027 uba2 non-coding upstream 36843 26123347 ~ 26124768 (-)
G208030 NA non-coding upstream 40603 26127107 ~ 26157046 (-)
G208029 ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837 non-coding upstream 48082 26134586 ~ 26155268 (-)
LOC111195825 NA other downstream 87270 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 141732 25919220 ~ 25938032 (-)
G207940 NA other downstream 346460 25592631 ~ 25733304 (-)
G207903 NA other downstream 727090 25317002 ~ 25352674 (-)
usb1 NA other downstream 819597 25251235 ~ 25260167 (-)
LOC111195761 NA other upstream 147 26086651 ~ 26088415 (-)
LOC111195835 NA other upstream 16983 26103487 ~ 26117632 (-)
G208046 NA other upstream 125554 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 568939 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 2129891 28216395 ~ 28268369 (-)

Expression


Co-expression Network