LOC111195761


Basic Information

Item Value
gene id LOC111195761
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26086651 ~ 26088415 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282333
GAGATGAAGaagataagctgtgtgtgtgcggcCCTGGGGCTGGTTCTGCTGATAGCAGTCTCCTCAGTATCCAGCACTCACGCCGCCAATCAACCGATTATGTGCTGTTTTCACTTTGTGAAATTTAAAATTCCAGTCAAAAATATCCTTACAGTTGAAAAGACAGGTTCCGACTGCCCGATCCCTGGCTATGTGGTTACAACACCTCGGGGCAAGTTCTGCAAGCAGGAAGATGTTCTTCAAGACTAGATTCAGTGCAGCTGCTTCTACACCACTAATCTGCAGCTCAAAGTGCAGCTAAAATACAGCTTAATATGCTTCTTTATATACTCATATATGCAA
>XM_022683899.1
CAGCAGACTAGGATAAAGATCAGAGACGAGAACATTCAAGGGTTCAGAGACCTGGAGAGATGAAGaagataagctgtgtgtgtgcggcCCTGGGGCTGGTTCTGCTGATAGCAGTCTCCTCAGTATCCAGCACTCACGCCGCCAATCAACCGATTATGTGCTGTTTTCACTTTGTGAAATTTAAAATTCCAGTCAAAAATATCCTTACAGTTGAAAAGACAGGTTCCGACTGCCCGATCCCTGGCTATGTGGTTACAACACCTCGGGGCAAGTTCTGCAAGCAGGAAGATGTTCTTCAAGACTAGATTCAGTGCAGCTGCTTCTACACCACTAATCTGCAGCTCAAAGTGCAGCTAAAATACAGCTTAATATGCTTCTTTATATACTCATATATGCAATCTTAATATCAtcaaagtggatttttttttcttttcagtatgTACCAATGCTTCTTTTATGCtgcagataaaaataaaaatgcatggcCTGAATCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282333 False 342 lncRNA 0.44 3 26086749 26088359
XM_022683899.1 True 496 mRNA 0.42 3 26086651 26088415

Neighbor

gene id symbol gene type direction distance location
LOC103040521 NA coding downstream 401040 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 514380 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 634560 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 808891 25270141 ~ 25277760 (-)
drc7 NA coding downstream 855640 25212565 ~ 25231011 (-)
LOC111195867 NA coding upstream 3755 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 8390 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 155833 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 525447 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 585191 26673606 ~ 26715253 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding downstream 10005 26061311 ~ 26076646 (-)
G208011 NA non-coding downstream 71648 26014747 ~ 26015003 (-)
G208008 NA non-coding downstream 73035 26007220 ~ 26013616 (-)
G207965 NA non-coding downstream 169091 25903907 ~ 25917560 (-)
G207964 NA non-coding downstream 192174 25893140 ~ 25894477 (-)
G208022 NA non-coding upstream 3396 26091811 ~ 26099823 (-)
G208026 uba2,LOC107701803 non-coding upstream 33062 26121477 ~ 26122367 (-)
G208027 uba2 non-coding upstream 34932 26123347 ~ 26124768 (-)
G208030 NA non-coding upstream 38692 26127107 ~ 26157046 (-)
G208029 ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837 non-coding upstream 46171 26134586 ~ 26155268 (-)
LOC111195762 NA other downstream 147 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 94157 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 148619 25919220 ~ 25938032 (-)
G207940 NA other downstream 353347 25592631 ~ 25733304 (-)
G207903 NA other downstream 733977 25317002 ~ 25352674 (-)
LOC111195835 NA other upstream 15072 26103487 ~ 26117632 (-)
G208046 NA other upstream 123643 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 567028 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 2127980 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2573768 28662183 ~ 28695700 (-)

Expression


Co-expression Network