G208015 (sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154)


Basic Information

Item Value
gene id G208015
gene name sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26061311 ~ 26076646 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282339
CTTGGTCAGTTGACCCTTGCTCTTGCTGGCATCCACTCCGTTGCAGGTAACAGCAGCCAGCTTCTTGCTGCGGTAGTTCTCGTAGTGGACGTTATTGGTCACATCCTTCAGATCCTGCATGTGGGTCCTGATGAGCATGTTCCTCAGGACAGTGAAGTCACAGTGCTCTCCATTCTCCACTTCTGCCACGCCCCAGGGGTACTGACGCCCTCTGACCTTCCTCCCATTCACTTCCACCACCACGTTACTGCCAACCACAGCCAGAGGCATCCGCTCCTTTATCTTGCGGATGAGCTTACTGTCCTCGTCCTCCTCTGTGTCTGGAAACTCATAGATCTTTATCTTGTGCTCCTGAATCTCCTTCATAATctgtttctTAAAGAGCTGGCACTCCTCTGGTGTTAGTGTGTCAGCCTTGGCGATGAGTGGGATGACGTTGACCTTGTCGTGCAGACGCTTCATAAACTCAATATCCAGAGGCTTCAAACCGTGGCCAGAGGGGGCGATGAAGTACAGACAGCAGTGCAC

Function

symbol description
sept15 Predicted to enable GTPase activity and molecular adaptor activity. Acts upstream of or within several processes, including cardiac muscle contraction; organelle assembly; and pronephros morphogenesis. Predicted to be located in several cellular components, including cleavage furrow; kinetochore; and midbody. Predicted to be part of septin complex. Predicted to be active in cell division site; microtubule cytoskeleton; and septin ring. Is expressed in several structures, including digestive system; heart; hypoblast; nervous system; and pronephros. Orthologous to human SEPTIN7 (septin 7).

NR:

description
PREDICTED: septin-7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282339 True 528 lncRNA 0.52 6 26061311 26076646

Neighbor

gene id symbol gene type direction distance location
LOC103040521 NA coding downstream 375700 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 489040 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 609220 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 783551 25270141 ~ 25277760 (-)
drc7 NA coding downstream 830300 25212565 ~ 25231011 (-)
LOC111195867 NA coding upstream 15524 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 20159 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 167602 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 537216 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 596960 26673606 ~ 26715253 (-)
G208011 NA non-coding downstream 46308 26014747 ~ 26015003 (-)
G208008 NA non-coding downstream 47695 26007220 ~ 26013616 (-)
G207965 NA non-coding downstream 143751 25903907 ~ 25917560 (-)
G207964 NA non-coding downstream 166834 25893140 ~ 25894477 (-)
LOC111195755 NA non-coding downstream 205750 25852905 ~ 25855561 (-)
G208022 NA non-coding upstream 15165 26091811 ~ 26099823 (-)
G208026 uba2,LOC107701803 non-coding upstream 44831 26121477 ~ 26122367 (-)
G208027 uba2 non-coding upstream 46701 26123347 ~ 26124768 (-)
G208030 NA non-coding upstream 50461 26127107 ~ 26157046 (-)
G208029 ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837 non-coding upstream 57940 26134586 ~ 26155268 (-)
LOC111195825 NA other downstream 68817 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 123279 25919220 ~ 25938032 (-)
G207940 NA other downstream 328007 25592631 ~ 25733304 (-)
G207903 NA other downstream 708637 25317002 ~ 25352674 (-)
usb1 NA other downstream 801144 25251235 ~ 25260167 (-)
LOC111195762 NA other upstream 3118 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 10005 26086651 ~ 26088415 (-)
LOC111195835 NA other upstream 26841 26103487 ~ 26117632 (-)
G208046 NA other upstream 135412 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 578797 26655443 ~ 26656184 (-)

Expression


Co-expression Network